Highlights 2021: Artificial intelligence methods for modelling the spread of pathogens

Highlights 2021: Artificial intelligence methods for modelling the spread of pathogens in highly structured populations in space and time

BIOEPAR members share with you their highlights of the year 2021. A year still marked by the pandemic, but one in which the members of our laboratory have been very active! Each week we will share a highlight of the past year!

Complex farming systems (such as swine banding) rely on a high degree of population structuring in space and time. Writing mechanistic epidemiological models to understand, predict and control the spread of pathogens in such systems can be long, difficult and not very reusable. Methods at the confluence of artificial intelligence and software engineering have been developed to provide generic solutions for explicitly formalising such models in a form that is readable by non-modelling scientists. This provides modellers with a flexible framework for expressing the organisation and constraints of the populations under study in a very fine-grained way, with these specifications then being processed automatically by a simulation engine. These original methods were published at ICAART (international conference in AI with reading committee and proceedings) and will be applied to the modelling of the impact of swine banding on swine diseases (influenza and porcine reproductive and respiratory syndrome), in collaboration with the Anses.

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Organisational system applied to a farrow-to-finish pig farm, to represent social structuring in bands/litter and spatial structuring in sectors/barns.
The same mechanisms are used for both types of organisation.

Modification date : 11 September 2023 | Publication date : 19 January 2022 | Redactor : SP