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2013

Abidi F., Girault T., Douillet O., Guillemain G., Sintes G., Laffaire M., Ben Ahmed H., Smiti S., Huche-Thelier L., Leduc N. 2013.Blue light on Rose photosynthesis and photomorphogenesis .Plant Biology,15:67-74

Arrieta-Ortiz ML, Rodríguez-R LM, Pérez-Quintero AL, Poulin L, Díaz AC, Rojas NA, Bart R, Boch J, Boureau T, Darrasse A, David P, Dugé de Bernonville T, Fontanilla P, Gagnevin L, Guérin F, Jacques MA, Lauber E, Lefeuvre P., Medina C., Medina E, Montenegro N, Muñoz Bodnar A, Noël LD, Ortiz Quiñones JF, Osorio D, Pardo C, Patil PB, Poussier S, Pruvost O, Restrepo Benavides M, Robène-Soustrade I, Ryan R, Tabima J, Trujillo C, Urrego Morales OG, Vernière C, Carrere S, Verdier V, Szurek B, Restrepo S, López C, Koebnik R, Bernal A. 2013.Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151.PLoS One,

Auvray, G, Malécot, V. 2013.A revision of Cytisus sections Alburnoides, Spartopsis and Verzinum (Genisteae, Fabaceae).Edinburgh Journal of Botany,70(1): 61-120

Belin E, Rousseau D, Boureau T, Caffier V 2013.Thermography versus chlorophyll fluorescence imaging for detection and quantification of apple scab.Computer and electronics in agriculture,90: 159-163

Ben Sadok I., Celton J.M., Essalouh L., El Aabidine A.Z., Garcia G., Martinez S., Grati-Kamoun N., Rebai A., Costes E. & Khadari B.2013.QTL Mapping of Flowering and Fruiting Traits in Olive.PLoS One,May 2013, Vol. 8, Issue 5, e62831

Benamar A, Pierart A, Baecker V, Avelange-Macherel MH, Rolland A, Gaudichon S, di Gioia L, Macherel D2013.A simple system using natural mineral water for high-throughput phenotyping of Arabidopsis thaliana seedlings in liquid culture.International Journal of High-throughput Screening,4: 1-15

Bolot S., Munoz-Bodnar A., Cunnac S., Ortiz E., Szurek B., Noël L., Arlat M., Jacques M-A., Gagnevin L., Portier P., Fischer-Le Saux M., Carrere S. and Koebnik R. 2013.Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642. .Genome Announcements,1(4)

Boumaza, R., Yousfi, S., Demotes-Mainard, S. 2013. Interpreting the principal component analysis of multivariate density functions..Communications in statistics. Theory and methods

Boureau T., Kerkoud M., Chhel F., Hunault G., Darrasse A., Brin C., Durand K., Hajri A., Poussier S, Manceau C., Lardeux F., Saubion F., Jacques M-A. 2013.A multiplex-PCR assay for identification of the quarantine plant pathogen Xanthomonas axonopodis pv. phaseoli.Journal of Microbiological Methods,92:42-50

Bourget R, Chaumont L, Sapoukhina N 2013.Timing of pathogen adaptation to a multicomponent Treatment.PLoS One,8(8): e71926. doi:10.1371

Buck-Sorlin G. & Delaire M. 2013.Meeting present and future challenges in sustainable horticulture using virtual plants.Frontiers in Plant Biophysics and Modeling,

Calmes B, Guillemette T, Teyssier L, Siegler B, Pigné S, Landreau A, Iacomi B, Lemoine R, Richomme P, Simoneau P.2013.Role of mannitol metabolism in the pathogenicity of the necrotrophic fungus Alternaria brassicicola.Frontiers in plant microbe interaction,4:131. doi: 10.3389/fpls.2013.00131

Candat A, Poupart P, Andrieu JP, Chevrollier A, Reynier P, Rogniaux H, Avelange-Macherel MH, Macherel D 2013.Experimental determination of organelle targeting peptide cleavage sites using transient expression of GFP translational fusions.Analytical Biochemistry,434: 44-51

Charrier A, Lelievre E, Limami AM, Planchet E. 2013.Medicago truncatula stress associated protein 1 gene (MtSAP1) overexpression confers tolerance to abiotic stress and impacts proline accumulation in transgenic tobacco.Journal of Plant Physiology,170: 874-877

Chatelain E, Satour P, Laugier E, Ly Vu B, Payet N, Rey P, Montrichard F.2013.Evidence for participation of the methionine sulfoxide reductase repair system in plant seed longevity.PNAS,110(9): 3633-8

Chupeau M.C., Granier F., Pichon O., Renou J.P., Gaudin V. & Chupeau Y. 2013.Characterization of the Early Events leading to Totipotency in an Arabidopsis Protoplast Liquid Culture by Temporal Transcript Profiling.Plant Cell,Jul 31. [Epub ahead of print].

Cornille A., Giraud T., Bellard C., Tellier A., Le Cam B., Smulders R., Kleinschmit J., Roldan-Ruiz I., Gladieux P2013.Post-glacial recolonization of the European crabapple (Malus sylvestris Mill.), a wild contributor to the domesticated apple.Molecular ecology,22, 2249–2263

Crespel L., Sigogne M., Donès N., Relion D., Morel P. 2013.Identification of relevant morphological, topological and geometrical variables to chracterize the architecture of rose bushes in relation to plant shape.Euphytica,online 20/3/13

Degrave A, Moreau M, Launay A, Barny MA, Brisset MN, Patrit O, Taconnat L, Vedel R, Fagard M.2013.The bacterial effector DspA/E is toxic in Arabidopsis thaliana and is required for multiplication and survival of fire blight pathogen.Molecular Plant Pathology ,14:506-517

Dejean G, Blanvillain-Baufumé S., Boulanger A., Darrasse A., Dugé de Bernonville T., Girard A.-L., Carrere S., Jamet S., Zischek C., Lautier M., Solé M., Büttner D., Jacques M.-A., Lauber E. and M. Arlat. 2013.The xylan utilisation system of the plant pathogen Xanthomonas campestris pv. campestris controls epiphytic life and reveals common features with oligotrophic bacteria and animal gut symbionts. .New Phytologist,198: 899–915

Delahaie J, Hundertmark, M, Bove J, Leprince O, Rogniaux H, Buitink J2013.LEA polypeptide profiling of recalcitrant and orthodox legume seeds reveals ABI3-regulated LEA protein abundance linked to desiccation tolerance.Journal of Experimental Botany,doi:10.1093/jxb/ert274

Demotes-Mainard S, Huché-Thélier L, Morel P, Boumaza R, Guérin V, Sakr S2013.Temporary water restriction or light intensity limitation promotes branching in rose bush.Scientia Horticulturae,150 : 432-440

Djennane, S., Hibrand-Saint Oyant, L., Kawamura, K., Lallane, D., Laffaire, M., Thouroude, T., Chalain, S., Sakr, S., Boumaza, R., Foucher, F., Leduc, N.2013.Impacts of light and temperature on shoot branching gradient and expression of strigolactone synthesis and signalling genes in rose.Plant, Cell & Environment,(doi: 10.1111/pce.12191)

Escalon A., Javegny S., Vernière C., Noël L. D., Vital K., Poussier S, Hajri A, Boureau T, Pruvost O, Arlat M, Gagnevin L2013.Variations in type III effector repertoires, pathological 1 phenotypes and host range of Xanthomonas citri pv. citri pathotypes.Molecular Plant Pathology,14(5):483-496

Fourcade Y., Chaput-Bardy A., Secondi J., Fleurant C. and Lemaire C.2013.Is local selection so widespread in river organisms? Fractal geometry of river networks leads to high bias in outlier detection.Molecular ecology, 22, 2065–2073

Gaucher M., Dugé de Bernonville T., Guyot S., Dat J.F., Brisset M.N.2013.Same ammo, different weapons: enzymatic extracts from two apple genotypes with contrasted susceptibilities to fire blight (Erwinia amylovora) differentially convert phloridzin and phloretin in vitro.Plant Physiology & Biochemistry

Gaucher M., Dugé de Bernonville T., Lohou D., Guyot S., Guillemette T., Brisset M.N., Dat J.F.2013.Histolocalisation and physicol-chemical characterization of dihydrochalcones: insight into the role of apple major flavonoids.Phytochemistry,90:78-89

Girardi C.L., Rombaldi C. V., Dal Cero J., Nobile P., Laurens F., Bouzayen M., Quecini V.2013.Genome-wide analysis of the AP2/ERF superfamily in apple and transcriptional evidence of ERF involvement in scab pathogenesis.Scientia Horticulturae ,151 (2013) 112–121

Gueguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K, Dutheil JY 2013.Bio++: efficient extensible libraries and tools for computational molecular evolution.Molecular biology and evolution,30(8):1745-1750

Guy E., Genissel A., Hajri A., Chabannes M., David P., Carrere S., Lautier M., Roux B., Boureau T., Arlat M., Poussier S., Noel L.2013.Natural Genetic Variation of Xanthomonas campestris pv. campestris Pathogenicity on Arabidopsis Revealed by Association and Reverse Genetics.Mbio ,4(3) e00538-12

Huard-Chauveau C, Perchepied L, Debieu M, Rivas S, Kroj T, Kars I, Bergelson J, Roux F, Roby D.2013.An Atypical Kinase under Balancing Selection Confers Broad-Spectrum Disease Resistance in Arabidopsis..Plos Genetics ,Sep;9(9):e1003766

Jubault M., Lariagon C., Taconnat L., Renou J.P., Gravot A., Delourme R. & Manzanares-Dauleux M.J. 2013.Partial resistance to clubroot in Arabidopsis is based on changes in the host primary metabolism and targeted cell division and expansion capacity.Funct Integr Genomics. ,Jun;13(2):191-205

Le Van A, Caffier V, Lasserre-Zuber P, Chauveau A, Brunel D, Le Cam B, Durel C-E2013.Differential selection pressures exerted by host resistance quantitative trait loci on a pathogen population: a case study in an apple Venturia inaequalis pathosystem.New Phytologist,197: 899-908

Léran S, Varala K, Boyer J-C, Chiurazzi M, Crawford N, Daniel-Vedèle F, David L, Dickstein R, Fernandez E, Forde B, Gassmann W, Geiger D, Gojon A, Gong J-M, Halkier B A, Harris J M, Hedrich R, Limami A M, Rentsch D, Seo M, Tsay Y-F, Zhang M, Coruzzi G, Lacombe B2013.A unified nomenclature of NITRATE TRANSPORTER 1 / PEPTIDE TRANSPORTER family members in plants.Trends in Plant Science,

Leroy T., Lemaire C., Dunemann F., Le Cam B2013.Fine-scale spatial genetic structure of fungal pathogen populations in a heterogenous habitat..BMC Evolutionary Biology ,13: 64. doi:10.1186/1471-2148-13-64

Macherel D, Jaspard E, Candat A, Hunault G, Poupart P, Rolland A, Benamar A, Avelange-Macherel MH 2013.Why so many LEA proteins ?.Cryobiology and Cryotechnology,59(1):35-39

Macherel D. 2013. We become more aware of the void as we explore it. New Phytologist,199:873-875

Marchi M., Boutin M., Gazengel K., Rispe C., Gauthier JP., Guillerm-Erckelboudt AY., Lebreton L., Barret M., Daval S. and Sarniguet A.2013.Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots. Environmental Microbiology Reports,5: 393-403

Ménard L.,P.E. Brandeis, P. Simoneau, P. Poupard, I. Sérandat, J. Detoc, L. Robbes, F. Bastide, E. Laurent, J. Gombert, E. Morel2013.First report of Umbel Browning and Stem Necrosis caused by Diaporthe angelicae on carrot in France.Plant Disease

Mhedbi-Hajri N., Hajri A, Boureau T., Darrasse A., Durand K., Brin C., Fischer-Lesaux M., Manceau C., Poussier S., Pruvost O., Lemaire C., Jacques M-A.2013.Evolutionary History of the Plant Pathogenic Bacterium Xanthomonas axonopodis.PLoS One,8(3):e58474

Mondy S, Lenglet A, Cosson V, Pelletier S, Pateyron S, Gilard F, Scholte M, Brocard L, Couzigou JM, Tcherkez G, Péan M, Ratet P.2013.GOLLUM [FeFe]-hydrogenase-like proteins are essential for plant development in normoxic conditions and modulate energy metabolism..Plant, Cell & Environment

Montanari S, Saeed M, Knäbel M, Kim YK, Troggio M, Malnoy M, Velasco R, Fontana P, Won KH, Durel CE, Perchepied L, Schaffer R, Wiedow C, Bus V, Brewer L, Gardiner SE, Crowhurst RN, Chagné D2013.Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids.PLoS One

Pochon S, Simoneau P, Pigné S, Balidas S, Bataillé-Simoneau N, Campion C, Jaspard E, Calmes B, Hamon B, Berruyer R, Juchaux M, Guillemette T.2013.Dehydrin-like proteins in the necrotrophic fungus Alternaria brassicicola have a role in plant pathogenesis and stress response.PLoS One

Ranocha P., Dima O., Nagy R., Felten J., Corratgé-Faillie C., Novák O., Morreel K., Lacombe B., Martinez Y., Pfrunder S., Jin X., Renou J.-P., Thibaud J.-B., Ljung K., Fischer U., Martinoia E., Boerjan W. & Goffner D.2013.Arabidopsis WAT1 is a vacuolar auxin transport facilitator required for auxin homeostasis.Nature Communications

Rouached A, Slama I, Zorrig W, Jdeya A, Cukier C, Rabhi M , Talbi O, Limami A M, Abdelly C2013.Differential performance of two forage species: Medicago truncatula and Sulla carnosa under water deficit stress and recovery.Crop and Pasture Sciences ,

Rousseau C., Belin E., Bove E., Rousseau D., Fabre F., Berruyer R., Guillaumès J., Manceau C., Jacques M-A., Boureau T.2013.High throughput quantitative phenotyping of plant resistance using chlorophyll fluorescence image analysis.Plant Methods,9:17

Saïdou A-A, Clotault J, Couderc M, Mariac C, Devos KM, Thuillet A-C, Amoukou IA, Vigouroux Y2013.Association Mapping, Patterns of Linkage Disequilibrium and Selection in the Vicinity of the Phytochrome C Gene in Pearl Millet..Theoretical and Applied Genetics

Sapoukhina N., Paillard S., Dedryver F., Vallavieille-Pope C2013.Quantitative plant resistance in cultivar mixtures: Wheat stripe rust as a modeling case study.New Phytologist,doi: 10.1111/nph.12413

Siamer S., Gaubert S., Boureau T., Brisset MN, Barny MA.2013.Mutational analysis of a predicted double b-propeller domain of the DspA/E effector of Erwinia amylovora.FEMS Microbiology Letters,342:54-61

Soufflet-Freslon, V., Jourdan, M., Clotault, J., Huet, S., Briard, M., Peltier, D., Geoffriau, E.2013.Functional gene polymorphism to reveal species history: the case of the CRTISO gene in cultivated carrots.PLoS One,8(8): e70801

Verdier J, Pelletier S, Lalanne D, Torres-Jerez I, Righetti K, Bandyopadhyay K, Leprince O, Chatelain E, Ly Vu B, Gouzy J, Gamas P, Udvardi M, and Buitink J2013.A regulatory network-based approach dissects late maturation processes related to the acquisition of desiccation tolerance and longevity of Medicago truncatula seeds.Plant Physiology,pp.113.222380v1-pp.113.222380.

Verdu C. F., Gatto J., Freuze I., Richomme P., Laurens F., Guilet D.2013.Comparison of Two Methods, UHPLC-UV and UHPLC-MS/MS, for the Quantification of Polyphenols in Cider Apple Juices.Molecules ,18, 10213-10227; doi:10.3390/molecules180910213

Verdu C., Childebrand N., Marnet N., Le Bail G., Dupuis F., Laurens F., Guilet D., Guyot S.2013.Polyphenol variability in the fruits and juices of a cider apple progeny.Journal of Science of Food and Agriculture

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2013