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Accueil Publications et COV 2021

2021

  • Abadie C, Lalande J, Limami AM, Tcherkez G (2021) Non-targeted 13C metabolite analysis demonstrates broad re-orchestration of leaf metabolism when gas exchange conditions vary. Plant Cell & Environment 44: 445-457.
  • Abadie C, Tcherkez G (2021) 13C Isotope Labelling to Follow the Flux of Photorespiratory Intermediates. Plants 10: 427.
  • Amiour N, Décousset L, Rouster J, Quenard N, Buet C, Dubreuil P, Quilleré I, Brulé L, Cukier C, Dinant S, Sallaud C, Dubois F, Limami AM, Lea PJ, Hirel B (2021) Impacts of environmental conditions, and allelic variation of cytosolic glutamine synthetase on maize hybrid kernel production. Communications Biology 4: 1095, DOI:10.1038/s42003-021-02598-w.
  • Barbier F, Da Cao, Franziska Fichtner, Christoph Weiste, Perez‐Garcia MD, Caradeuc M, Le Gourrierec J, Sakr S, Beveridge CA. 2021. HEXOKINASE1 signalling promotes shoot branching and interacts with cytokinin and strigolactone pathways. New Phytologist 231: 1088–1104, doi: 10.1111/nph.1742
  • Bianchetti G et al.(2021) Dataset for the metabolic and physiological characterization of seeds from oilseed rape (Brassica napus L.) plants grown under single or combined effects of drought and clubroot pathogen Plasmodiophora brassicae. Data Brief. 2021 Jul 3;37:107247. doi:10.1016/j.dib.2021.107247
  • Bizouerne E, Buitink J, Ly Vu B, Ly Vu J, Esteban E, Asha A, Provart N, Verdier J, Leprince O (2021) Gene co-expression analysis of tomato seed maturation reveals tissue-specific regulatory networks and hubs associated with the acquisition of desiccation tolerance and seed vigour. BMC Plant Biology 21:124. doi.org/10.1186/s12870-021-02889-8
  • Bizouerne E, Ly Vu B, Ly Vu J, Verdier J, Buitink J, Leprince O (2021) Dataset for transcriptome and physiological response of mature tomato seed tissues to light and heat during fruit ripening. Data in Brief 34: 106671. doi.org/10.1016/j.dib.2020.106671
  • Boumaza R, Santagostini P, Yousfi S, Demotes-Mainard S. dad: an R Package for Visualisation, Classification and Discrimination of Multivariate Groups Modelled by their Densities. The R Journal, Di Cook, Monash University, Australia. ⟨hal-03344822⟩
  • Briand M, Ruh M, Darrasse A, Jacques M-A, Chen NWG. 2021. Complete and Circularized Genome Sequences of 17 Xanthomonas strains responsible for common bacterial blight of bean. Microbiology Resource Announcements. 10(31). https://doi. org/10 . 1128/MRA. 00371-21
  • Canivet CM, David N, Pailhoriès H, Briand M, Guy CD, Bouchez O, Hunault G, Fizanne L, Lannes A, Oberti F, Fouchard I, Calès P, Diehl AM, Barret M, Boursier J. 2021. Cross-linkage between bacterial taxonomy and gene functions: a study of metagenome-assembled genomes of Gut Microbiota in adult non-alcoholic fatty liver disease. Aliment Pharmacol Ther. DOI: 10. 1111/apt. 16262
  • Carrere S, Verdier J, Gamas P (2021) MtExpress, a comprehensive and curated RNAseq-based gene expression atlas for the model legume Medicago truncatula. Plant and Cell Physiology doi.org/10.1093/pcp/pcab110
  • Cartelier K, Aimé, D, Ly Vu J, Combes‐Soia L, Labas V, Prosperi J‐M, Buitink J, Gallardo K, Le Signor C (2021) Genetic determinants of seed protein plasticity in response to the environment in Medicago truncatula, The Plant Journal, 106(5):1298-1311 doi.org/10.1111/tpj.15236
  • Catara V, Cubero J, Pothier JF, Bosis E, Bragard C, Ðermic E, Holeva MC, Jacques M-A, Petter F, Pruvost O, Robène I, Studholme DJ, Tavares F, Vicente JG, Koebnik R, Costa J. 2021. Trends in Molecular Diagnosis and Diversity Studies for phytosanitary Regulated Xanthomonas. Microorganisms. 9:861. https://doi. org/10. 3390/microorganisms9040862
  • Celton et al. The apple genome and epigenome (2021) In: Korban S.S. (eds) The Apple Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-030-74682-7_8
  • Charpin et Malécot V, 2021, Dictionnaire des membres de la société botanique de France (1854-1953). Journal de Botanique, Hors Série 2021. 1-640.
  • Chen NWG, Ruh M, Darrasse A, Foucher J, Briand M, Costa J, Studholme DJ, Jacques M-A. 2021. Common bacterial blight of bean: a model of seed transmission and pathological convergence. Molecular Plant Pathology . 00:1–17. Coll. DOI: 10. 1111/mpp. 13067
  • Chen Z, Lancon-Verdier V, Le Signor C, She Y-M, Kang Y, Verdier J (2021) Genome-wide association study identified candidate genes for seed size and seed composition improvement in M. truncatula. Scientific Reports 11, 4224. doi.org/10.1038/s41598-021-83581-7
  • Chen Z, Ly Vu B, Leprince O, Verdier J (2021) RNA sequencing data for heat stress response in isolated Medicago truncatula seed tissues. Data Brief 35: 106726. doi.org/10.1016/j.dib.2021.106726
  • Chen Z, Ly Vu J, Ly Vu B, Buitink J, Leprince O, Verdier J (2021) Genome-wide association studies of seed performance traits in response to heat stress in uncover MIEL1 as a regulator of seed germination plasticity. Frontiers in Plant Science 04 June 2021 doi.org/10.3389/fpls.2021.673072
  • Chevalier, W., Moussa, S.-A., Medeiros Netto Ottoni, M., Dubois-Laurent, C., Huet, S., Aubert, C., Desnoues, E., Navez, B., Cottet, V., Chalot, G., Jost, M., Barrot, L., Freymark, G., Uittenbogaard, M., Chaniet, F., Suel, A., Bouvier Merlet, M.H., Hamama, L., Le Clerc, V., Briard, M., Peltier, D., Geoffriau, E. 2021. Multisite evaluation of phenotypic plasticity for specialized metabolites, some involved in carrot quality and disease resistance. Plos One 16(4): e0249613.
  • Clavijo-Coppens F, Ginet N, Cesbron S, Briand M, Jacques M-A, Ansaldi M. 2021. Novel Virulent Bacteriophages Infecting Mediterranean Isolates of the Plant Pest Xylella fastidiosa and Xanthomonas albilineans. Viruses. 13: 725. P. https://doi. org/10. 3390/v13050725
  • Cui J, Davanture M, Lamade E, Zivy M, Tcherkez G (2021) Plant low-K responses are partly due to Ca prevalence and the low-K biomarker putrescine does not protect from Ca side effects but acts as a metabolic regulator. Plant Cell & Environment 44:1565-1579.
  • Cui J, Nieves-Cordones M, Rubio F, Tcherkez G (2021) Involvement of salicylic acid in the response to potassium deficiency revealed by metabolomics. Plant Physiology and Biochemistry 163: 201-204.
  • Cui J, Peuke AD, Limami AM, Tcherkez G (2021) Why is phloem sap kept low? Plant Cell & Environment 44: 2838-2843.
  • Cui J, Tcherkez G (2021) Potassium dependency of enzymes in plant primary metabolism. Plant Physiology and Biochemistry 166: 522-530.
  • Debray K, Le Paslier MC, Bérard A, Thouroude T, Michel G, Marie-Magdelaine J, Bruneau A, Foucher F, Malécot V. 2021. Unveiling the Patterns of Reticulated Evolutionary Processes with Phylogenomics: Hybridization and Polyploidy in the Genus Rosa. Systematic Biology, 2021, https://doi.org/10.1093/sysbio/syab064
  • Debs, N., Cho, T. H., Rousseau, D., Berthezène, Y., Buisson, M., Eker, O., ... & Frindel, C. (2021). Impact of the reperfusion status for predicting the final stroke infarct using deep learning. NeuroImage: Clinical, 29, 102548.
  • Douarre, C., Crispim-Junior, C. F., Gelibert, A., Germain, G., Tougne, L., & Rousseau, D. (2021). CTIS-Net: a neural network architecture for compressed learning based on Computed Tomography Imaging Spectrometers. IEEE Transactions on Computational Imaging.
  • Duminil P, Davanture M, Oury C, Boex-Fontvieille E, Tcherkez G, Zivy M, Hodges M, Glab N (2021) Arabidopsis thaliana 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 activity requires serine 82 phosphorylation. Plant Journal DOI: 10.1111/tpj.15395
  • ElMasry G, Mandour N, Ejeez H, Demilly D, Al-Rejaie S, Verdier J, Belin E, Rousseau D (2021) Multichannel imaging for monitoring chemical composition and germination capacity of cowpea. The Crop Journal. doi.org/10.1016/j.cj.2021.04.010
  • Engel M, Ceríaco LMP, Daniel G, Dellapé PM, Löbl I, Marinov M, Reis RE, Young MT, Dubois A, Agarwal I, Lehmann PA, Alvarado M, Alvarez N, Andreone F, Araujo-Vieira K, Ascher JS, Baêta D, Baldo D, Bandeira SA, Barden P, Barrasso DA, Bendifallah L, Bockmann FA, Böhme W, Borkent A, Brandão C, Busack SD, Bybee SM, Channing A, Chatzimanolis S, Christenhusz M, Crisci J, D’elía G, Da Costa L, Davis S, De Lucena CAS, Deuve T, Elizalde SF, Faivovich J, Farooq H, Ferguson AW, Gippoliti S, Gonçalves FMP, Gonzalez VH, Greenbaum E, Hinojosa-Díaz IA, Ineich I, Jiang J, Kahono S, Kury AB, Lucinda P, Lynch J, Malécot V, Marques MP, Marris JWM, Mckellar RC, Mendes LF, Nihei SS, Nishikawa K, Ohler A, Orrico VGD, Ota H, Paiva J, Parrinha D, Pauwels OSG, Pereyra MO, Pestana LB, Pinheiro LDP, Prendini L, Prokop J, Rasmussen C, Rödel MO, Rodrigues MT, Rodríguez SM, Salatnaya H, Sampaio I, Sánchez-García A, Shebl MA, Santos BS, Solórzano-Kraemer MM, Sousa ACA, Stoev P, Teta P, Trape JF, Van-Dúnem Dos Santos C, Vasudevan K, Vink CJ, Vogel G, Wagner P, Wappler T, Ware JL, Wedmann S, Zacharie CK. 2021. Taxonomic imprediment: a shortage of taxonomists, not the lack of technical approaches. Zoological Journal of the Linnaean Society, in advance in press.  https://doi.org/10.1093/zoolinnean/zlab072
  • Espinosa F., Deroin T, Malécot V, Wang W, Pinedo M, Nadot S, Jabbour F. 2021. Historical note on the taxonomy of the genus Delphinium L. (Ranunculaceae) with an amended description of its floral morphology. Adansonia sér. 3, 43 (2): 9-18. https://doi.org/10.5252/adansonia2021v43a2
  • Fort T, Pauvert C, Zanne AE, Ovaskainen O, Caignard T, Barret M, Compant S, Hampe A, Delzon S, Vacher C. 2021. Maternal effects shape the seed mycobiome in Quercus petraea. New Phytologist. 230:1594-1608. doi: 10. 1111/NPH. 17153
  • Foucher J, Ruh M, Briand M, Préveaux A, Barbazange F, Boureau T, Jacques M-A, Chen NWG. 2021. Improving common bacterial blight phenotyping by using rub-inoculation and machine learning: cheaper, better, faster, stronger. https://doi. org/10. 1094/PHYTO-04-21-0129-R
  • Graham EB, Averill C, Bond-Lamberty B, Knelman JE, Krause S, Peralta AL, Shade A, Smith AP, Cheng SJ, Fanin N, Freund C, Garcia PE , Gibbons SM, Van Goethem MW, Guebila Marouen B, Kemppinen J, Nowicki RJ, Pausas JG, Reed Samuel P, Rocca J, Sengupta A, Sihi D, Simonin M, Scowinski M, Spawn SA, Sutherland I, Tonkin JD, Wisnoski NI , Zipper SC, Contributor Consortium. 2021. Toward a generalizable framework of disturbance ecology through crowdsourced science. Frontiers in Ecology and Evolution. 9:76. https://doi. org/10. 3389/fevo. 2021. 588940
  • Guyen GQN, Raulo R, Porquier A, Iacomi B, Pelletier S, Renou JP, Bataillé-Simoneau N, Campion C, Hamon B, Kwasiborski A, Colou J, Benamar A, Hudhomme P, Macherel D, Simoneau P, Guillemette T (2021) Responses of the necrotrophic fungus Alternaria brassisicola to the indolic phytoalexin brassinin. Frontiers in Plant Sciences 11: 1–19.
  • Hammad M, Guillemette T, Alem M, Bastide F, Louanchi M. 2021. First report of three species of Trichoderma isolated from the rhizosphere in Algeria and the high antagonistic effect of Trichoderma brevicompactum to control grey mould disease of tomato. Egyptian Journal of Biological Pest Control 31:85
  • Howard N.P., Peace C., Silverstein K.A.T., Poets A., Luby J.J., Vanderzande S., Durel C.E., Muranty H., Denancé C., van de Weg E. (2021) The use of shared haplotype length information for pedigree reconstruction in asexually propagated outbreeding crops, demonstrated for apple and sweet cherry. Horticulture Research 8:202 https://doi.org/10.1038/s41438-021-00637-5
  • Howard N.P., Troggio M., Durel C.E., Muranty H., Denancé C., Bianco L., Tillman J., van de Weg E. (2021) Integration of Infinium and Axiom SNP array data in the outcrossing species Malus × domestica and causes for seemingly incompatible calls. BMC Genomics 22:246 https://doi.org/10.1186/s12864-021-07565-7
  • Janse van Rensburg HC, Limami AM, Van den Ende W (2021) Spermine and spermidine priming against Botrytis cinerea modulates ROS dynamics and metabolism in Arabidopsis. Biomolecules 11: 223.
  • Kałużna M, Fischer-Le Saux M, Pothier JF, Jacques M-A, Obradović A, Tavares F, Stefani E. 2021. Xanthomonas arboricola pv. juglandis and pv. corylina: Brothers or distant relatives? Genetic clues, epidemiology, and insights for disease management. Molecular Plant Pathology. Early Access. Coll. https://dx. doi. org/10. 1111/mpp. 13073
  • Kaur S, Vian A, Pal Singh H, Chandel S, Batish DR, Sharma VP, Kohli RK. 2021. Sensitivity of plants to high frequency electromagnetic radiation: cellular mechanisms and morphological changes. Reviews in Environmental Science and Bio/Technology 20: 55–74
  • Laala S, Cesbron S, Kerkoud M, Valentini F, Bouznad Z, Jacques M-A, Manceau C. 2021. Characterization of Xanthomonas campestris pv. campestris in Algeria. Phytopathologia Mediterranea. 51-62. doi: 10. 36253/phyto-11726
  • Lalanne D, Malabarba J, Ly Vu J, Hundertmark M, Delahaie J, Leprince O, Buitink J, Verdier J (2021) Medicago ABI3 splicing isoforms regulate the expression of different gene clusters to orchestrate seed maturation. Plants 10(8):1710. doi.org/10.3390/plants10081710
  • Liu, S. , S. Decroocq, E. Harte, D. Tricon, A. Chague, G. Balakishiyeva, T. Kostritsyna, T. Turdiev, M. Fischer-Le Saux, S. Dallot, T. Giraud and V. Decroocq. 2021. Genetic diversity and population structure analyses in the Alpine plum (Prunus brigantina Vill. ) confirm its affiliation to the Armeniaca section. Tree Genetics & Genomes. 17(1): 2. DOI:10. 1007/s11295-020-01484-6
  • Luquet M, Penalver-Cruz A, Satour P, Anton S, Cortesero A-M, Lavandero B, Jaloux B (2021) Aphid honeydew may be the predominant sugar source for Aphidius parasitoids even in nectar-providing intercrops. Biological Controls 158: 104596.
  • Ma WT, Tcherkez G, Wang XM, Schäufele R, Schnyder H, Yang Y, Gong XY (2021) Accounting for mesophyll conductance substantially improves 13C-based estimates of intrinsic water-use efficiency. New Phytologist 229: 1326-1338.
  • Macherel D, Haraux F, Guillou H, Bourgeois O (2021) The conundrum of hot mitochondria. BBA Bioenergetics 1862: 148348.
  • Malabarba J, Windels D, Xu W, Verdier J (2021) Regulation of DNA (de)methylation positively impacts seed germination during seed development under heat stress. Genes 12(3): 457 doi.org/10.3390/genes12030457
  • Malabarba J., Chevreau E., Dousset N., Veillet F., Moizan J., Vergne E.  (2021) New strategies to overcome present CRISPR/Cas9 limitations in apple and pear: efficient dechimerization and base editing. International Journal of Molecular Sciences 22:319 https://doi.org/10.3390/ijms22010319
  • Mballo S, Herpin S, Manteau M, Demotes-Mainard S, Bournet PE. 2021. Impact of well-watered trees on the microclimate inside a canyon street scale model in outdoor environment. https://doi.org/10.1016/j.uclim.2021.100844
  • Merieux N, Cordier P, Wagner MH, Ducournau S, Aligon A, Job D, Grappin P, Grappin E. 2021. ScreenSeed as a novel high throughput seed germination phenotyping method. Scientific Reports 11:1404
  • Moury B, Audergon J.-M, Baudracco-Arnas S, Ben Krima S, Bertrand F, Boissot N, Buisson M, Caffier V, Cantet M, Chanéac S, Constant C, Delmotte F, Dogimont C, Doumayrou J, Fabre F, Fournet S, Grimault V., Jaunet T, Justafré I, Lefebvre V, Losdat D, Marcel T, Montarry J, Morris C. E, Omrani M, Paineau M, Perrot S, Pilet-Nayel M.-L, Ruellan Y 2021. The quasi-universality of nestedness in the structure of quantitative plant-parasite interactions. doi.org/10.1101/2021.03.03.433745, with recommandation by PCI Evol Biol, PCI journal
  • Née G, Châtel-Innocenti G, Meimoun P, Leymarie J, Montrichard F, Satour P, Bailly C, Issakidis-Bourguet E (2021) A new role for plastid thioredoxins in seed physiology in relation with hormone regulation. International Journal of Molecular Sciences
  • N'Guyen G, Raulo R, Porquier A, Iacomi B, Pelletier S, Renou JP, Bataillé-Simoneau N, Campion C, Hamon B, Kwasiborski A, Colou J, Benamar A, Hudhomme P, Macherel D, Simoneau P, Guillemette T. 2021. Responses of the necrotrophic fungus Alternaria brassisicola to the indolic phytoalexin brassinin. Frontiers in Plant Science 11:2216
  • N'Guyen G.Q., Raulo R., Porquier A., Iacomi B., Pelletier S., Renou JP., Bataillé-Simoneau N., Campion C., Hamon B., Kwasiborski A., Colou J., Benamar A., Hudhomme P., Macherel D., Simoneau P., Guillemette T. (2021) “Responses of the Necrotrophic Fungus Alternaria brassisicola to the Indolic Phytoalexin Brassinin”. Front Plant Sci. 2021 Jan 14;11:611643. doi: 10.3389/fpls.2020.611643.
  • Nguyen TT, Planchard N, Dahan J, Arnal N, Balzergue S, Benamar A, Bertin P, Brunaud V, Dargel-Graffin C, Macherel D, Martin-Magniette ML, Quadrado M, Namy O, Mireau H (2021) A case of gene fragmentation in plant mitochondria fixed by the selection of a compensatory restorer of fertility-like PPR gene. Molecular Biology and Evolution 38(8): 3445-3458.
  • Patil S, Barbier F,  Zhao J, Zafar SA, Uzair M, Sun Y, Fang J, Garcia, M-D, Fichtner F, Chabikwa T, Bertheloot J, Sakr S, Yuan S, Beveridge CA, Li X. 2021. Sucrose represses the expression of the strigolactone signalling gene D3/RMS4/MAX2 to promote tillering. New Phytologist (revision)
  • Porcher A, Guérin V, Leduc N, Lebrec A, Lothier J, Vian A. 2021. Ascorbate–glutathione pathways mediated by cytokinin regulate H2O2 levels in light-controlled rose bud burst. Plant Physiology 186 (2), 910-928
  • Porcher A., Guérin V., Leduc N., Lebrec L., Lothier J., Vian A. 2021. Ascorbate-glutathione pathways, mediated by cytokinin, regulate H2O2 level in light control in rose bud burst. Plant Physiology 0: 1-19
  • Ramananjatovo T, Chantoiseau E, Guillermin P, Guénon R, Delaire M, Buck-Sorlin G, Cannavo P. (2021). Growth of Vegetables in an Agroecological Garden-Orchard System: The Role of Spatiotemporal Variations of Microclimatic Conditions and Soil Properties. Agronomy 2021, 11, 1888. https://doi.org/10.3390/agronomy11091888  
  • Richard B, Dupouey JL, Corcket E, Alard D, Archaux F, Aubert M, Vincent Boulanger, Gillet F, Langlois E, Macé S, Montpied P, Beaufils T, Begeot C., Patrick Behr, Boissier JM, Camaret S, Chevalier R, Decocq G, Dumas Y, Eynard-Machet R, Gégout JC, Huet S, Malécot V, Margerie P, Mouly A, Paul T, Renaux B, Ruffaldi P, Spicher F, Thirion E, Ulrich E, Nicolas M,  Lenoir J. 2021. The climatic debt is growing in the understorey of temperate forests: Stand characteristics matter. Global Ecology and Biogeography 30:1474– 1487. https://doi.org/10.1111/geb.13312
  • Rocca JD, Muscarella ME, Peralta AL, Izabel-Shen D, Simonin M. 2021. Guided by Microbes: Applying Community Coalescence Principles for Predictive Microbiome Engineering. mSystems. 6(4), e00538-21. https://doi. org/10. 1128/mSystems. 00538-21
  • Rochefort A, Simonin M, Marais C, Guillerm-Erckelboudt AY, Barret M, Sarniguet A. 2021. Transmission of Seed and Soil Microbiota to Seedling. mSystems. 6(3), e00446-21. https://doi. org/10. 1128/mSystems. 00446-21
  • Román-Reyna V, Dupas E, Cesbron S, Marchi G, Campigli S, Hansen MA, Bush E, Prarat M, Shiplett K, Lewis Ivey ML, Pierzynski J, Miller SA, Hand FP, Jacques MA, Jacobs JM. 2021. Metagenomic sequencing for identification of Xylella fastidiosa from leaf samples. mSystems. in press. Coll.
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