2020

IRHS
Publications
2020

2020

  • Adams K., Araújo W., Aubourg S., Baginsky S., Bakker E., Bärenfaller K. et al. [The Multinational Arabidopsis Steering Committee] (2020) “Current status of the multinational Arabidopsis community”. Plant Direct, 4(7):e00248.
  • Ahmad, A., Frindel, C., & Rousseau, D. (2020). Detecting differences of fluorescent markers distribution in single cell microscopy: textural or pointillist feature space?. Frontiers in Robotics and AI, 7, 39.
  • Avelange-Macherel M-H, Rolland A, Hinault M-P, Tolleter D, Macherel D (2020) The mitochondrial small heat shock protein HSP22 from pea is a thermosoluble chaperone prone to co-precipitate with unfolding client proteins. International Journal of Molecular Sciences 21: 97.
  • Barakat I., Chtaina N., Grappin P., El Guilli M., Abdenbi E., Ezzahiri B. 2020. Efficacy of Secondary Metabolites Produced by Bacillus amyloliquefaciens on the Inhibition of Zymoseptoria tritici. Global Journal of Science Frontier Research: D Agriculture and Veterinary 20 : 9-16.
  • Bathellier C, Yu LJ, Farquhar GD, Coote ML, Lorimer GH, Tcherkez G (2020) Ribulose 1,5-bisphosphate carboxylase/oxygenase activates O2 by electron transfer. Proceedings of the National Academy of Sciences of The United States America 117: 24234-24242.
  • Ben Hdech D, Aubry C, Alibert B, Beucher D, Prospéri JM, Limami AM, Teulat B (2020) Exploring natural diversity of Medicago truncatula reveals physiotypes and loci associated with the response of seedling performance to nitrate supply. Physiologia Plantarum 170: 227-247.
  • Bénéjam J., Ravon E., Gaucher M., Brisset M.N., Durel C.E., Perchepied L. (2020) Acibenzolar-S-methyl and resistance quantitative trait loci complement each other to control apple scab and fire blight. Plant Disease (on line) https://doi.org/10.1094/PDIS-07-20-1439-RE
  • Bertheloot J, Barbier F, Boudon F, Perez-Garcia MD, Péron T, Citerne S, Dun E, Beveridge C, Godin C, Sakr S. 2020. Sugar availability suppresses the auxin-induced strigolactone pathway to promote bud outgrowth. New Phytologist 225:866-879. doi:10.1111/nph.16201
  • Bessadat N., Hamon B., Bataillé-Simoneau N., Chateau C., Mabrouk K., Simoneau P. 2020. Occurrence of Leaf Spot Disease Caused by Alternaria crassa (Sacc.) Rands on Jimson Weed and Potential Additional Host Plants in Algeria. Plant Pathology Journal 36(2) : 1-6.
  • Bessadat N., Hamon B., Bataillé-Simoneau N., Mabrouk K, Simoneau P. 2020. Alternaria telliensis sp. nov., a new species isolated from Solanaceae in Algeria. Phytotaxa.
  • Briand M, Bouzid M, Hunault G, Legeay M, Fischer-Le Saux M, Barret M. 2020. A rapid and simple method for assessing and representing genome sequence relatedness. Peer Community In Genomics. ver. 5 peer-reviewed and recommended by PCI Genomics. Coll. 10. 1101/569640
  • Cesbron S, Dupas E, Beaurepère Q, Briand M, Montes-Borrego M, Velasco-Amo MDP, Landa BB, Jacques MA. 2020. Development of A Nested-MultiLocus Sequence Typing Approach for A Highly Sensitive and Specific Identification of Xylella fastidiosa Subspecies Directly from Plant Samples. Agronomy. 10(8), 1099. 10. 3390/agronomy10081099
  • Chapeau-Blondeau, F., & Belin, E. (2020). Fourier-transform quantum phase estimation with quantum phase noise. Signal Processing, 170, 107441.
  • Chesneau G, G Torres-Cortes, M Briand, A Darrasse, A Preveaux, C Marais, M-A Jacques, A Shade, M Barret. 2020. Temporal dynamics of bacterial communities during seed development and maturation. FEMS Microbiology Ecology. 96:190. doi: 10. 1093/femsec/fiaa190
  • Cohen SP, Luna EK, Lang JM, Ziegle J, Chang C, Leach JE, Fischer-Le Saux M, Portier P, Koebnik R, Jacobs JM. 2020. High-quality genome resource of Xanthomonas hyacinthi generated via long-read sequencing. Plant Disease DOI: 10.1094/pdis-11-19-2393-a
  • Crespel L., Le Bras C., Amoroso T., Ulloa MGU, Morel P., Sakr S. (2020). Genotype x Light Quality Interaction on Rose Architecture. Agronomy-Basel 10(6). doi: 10.3390/agronomy10060913.
  • Cui J, Lamade E, Tcherkez G (2020) Seed Germination in Oil Palm (Elaeis guineensis Jacq.): A Review of Metabolic Pathways and Control Mechanisms. International Journal of Molecular Sciences 21(12): 4227.
  • Czerwinski M, Januszkiewicz L, Vian A, Lazaro A. 2020. The influence of bioactive telephony radiation at the level of a plant community: possible mechanism and indicators of the effects. Ecological indicators 108:105683
  • Debs, N., Rasti, P., Victor, L., Cho, T. H., Frindel, C., & Rousseau, D. (2020). Simulated perfusion MRI data to boost training of convolutional neural networks for lesion fate prediction in acute stroke. Computers in Biology and Medicine, 116, 103579.
  • Desprez-Loustau ML, Balci Y, Cornara D, Gonthier P, Robin C, Jacques MA. 2020. Is Xylella fastidiosa a serious threat to European forests? Forestry. 1–17. doi:10. 1093/forestry/cpaa029
  • Dutagaci H, Rasti P, Galopin G, Rousseau D, 2020. Rose-X an annotated data set for evaluation of 3D plant organ segmentation methods. PlantMethods 16 :28. https://doi.org/10.1186/s13007-020-00573-w.
  • Dutagaci, H., Rasti, P., Galopin, G., & Rousseau, D. (2020). ROSE-X: an annotated data set for evaluation of 3D plant organ segmentation methods. Plant methods, 16(1), 1-14.
  • ElMasry, G., ElGamal, R., Mandour, N., Gou, P., Al-Rejaie, S., Belin, E., & Rousseau, D. (2020). Emerging Thermal Imaging Techniques for Seed Quality Evaluation: Principles and Applications. Food Research International, 109025.
  • Feurtey A, Guitton E., De Gracia Coquerel M, Duvaux L, Shiller J, Bellanger MN, Expert P, Sannier M, Caffier V, Giraud T, Le Cam B, Lemaire C. 2020. Asian wild apples threatened by gene flow from domesticated apples and by their pestified pathogen. Accepted in Molecular Ecology doi.org/10.1101/2020.04.15.042242
  • Foucher J, M Ruh, A Préveaux, S Carrère, S Pelletier, M Briand, R-F Serre, M-A Jacques, NWG Chen. 2020. Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis. BMC Genomics 21:566. Doi :10. 1186/s12864-020-06972-6
  • Garbez M, Belin E, Chéné Y, Donès N, Hunault G, Relion D, Sigogne M, Symoneaux R, Rousseau D, Galopin G, 2020. A new approach to predict the visual appearance of rose bush from image analysis of 3D Videos. Eur. J. Hortic. Sci. 85(3) :182-190. 10.17660/eJHS.2020/85.3.6
  • Gauthier PPG, Saenz N, Griffin KL, Way D, Tcherkez G (2020) Is the Kok effect a respiratory phenomenon? Metabolic insight using 13C labeling in Helianthus annuus leaves. New Phytologist 228: 1243-1255.
  • Jung M, Roth M, Aranzana MJ, A. Auwerkerken, M. Bink, C. Denancé, C. Dujak, C.-E. Durel, C. Font i Forcada, C.M. Cantín, W. Guerra, N. Howard, M. Lewandowski, M. Ordidge, M. Rymenants, N. Sanin, B. Studer, E. Zurawicz, F. Laurens, A. Patocchi, H. Muranty; 2020. The apple REFPOP—a reference population for genomics-assisted breeding in apple. Horticulture research 7:189.  doi: 10.1038/s41438-020-00408-8.
  • Karagiannis E., Tanou G., Scossa F., Samiotaki M., Michailidis M., Manioudaki M., Laurens F., Job D., Fernie A. R., Orsel M., Molassiotis A., 2020. Systems-Based Approaches to Unravel Networks and Individual Elements Involved in Apple Superficial Scald. Frontiers in Plant Science, 11, 8.
  • Kerdraon L, Barret M, Balesdent M-H, Suffert F. 2020. Impact of a resistance gene against a fungal pathogen on the plant host residue microbiome: The case of the Leptosphaeria maculans–Brassica napus pathosystem. Molecular Plant Pathology . 21:1545-1558. DOI: 10. 1111/mpp. 12994
  • Koebnik R, Burokiene D, Bragard C, Chang C, Fischer-Le Saux M, Kölliker R, Lang J, Leach J, Luna E, Portier P, Sagia A, Ziegle J, Cohen SP, Jacobs J. 2021. The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads. Phytopathology. 111:611-616. 10. 1094/phyto-07-20-0273-sc
  • Lacault C, Briand M, Jacques M-A, Darrasse A. 2020. Zucchini vein clearing disease is caused by several lineages within Pseudomonas syringae species complex. Phytopathology DOI:10.1094/PHYTO-07-19-0266-R
  • Lallemand T., Leduc M., Landès C., Rizzon C., Lerat E. (2020). "An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice". Genes, 11(9):1046.
  • Langensiepen M, Marcel A.K. Jansen, Astrid Wingler, Barbara Demmig-Adams, William Adams, Ian Dodd, Vasileios Fotopoulos, Rod Snowdon, Erola Fenollosa, Mario de Tullio, Gerhard Buck-Sorlin, Sergi Munné-Bosch (2020). Linking integrative plant physiology with agronomy to sustain future plant production. Environmental and Experimental Botany, Elsevier, 2020, 178, pp.104125. ⟨10.1016/j.envexpbot.2020.104125⟩. ⟨hal-02961859⟩
  • Leclerc, P., Ray, C., Mahieu-Williame, L., Alston, L., Frindel, C., Brevet, P. F. & Rousseau, D. (2020). Machine learning-based prediction of glioma margin from 5-ALA induced PpIX fluorescence spectroscopy. Scientific reports, 10(1), 1-9.
  • Leyte-Lugo M, Richomme P, Poupard P, Peña-Rodriguez LM. 2020. Identification and quantification of a phytotoxic metabolite from Alternaria dauci. Molecules 25:4003
  • Lopez Arias DC, Chastellier A, Thouroude T, Bradeen J, Van Ech L, De Oliveira Y, Paillard S, Foucher F, Hibrand-Saint Oyant L and Soufflet-Freslon V (under revision). Characterization of black spot resistance in diploid roses with QTL detection, meta-analysis and candidate-gene identification. Theoretical and Applied Genetics IF5: 4.0; Notoriété Excellente
  • Lothier J, Diab H, Cukier C, Limami AM, Tcherkez G (2020) Metabolic responses to waterlogging differ between roots and shoots and reflect phloem transport alteration in Medicago truncatula. Plants 9: 1373.
  • Marc M, Cournol M, Hanteville S, Poisson AS, Guillou MC, Pelletier S, Laurens F, Tessier C, Coureau C, Renou J-P, Delaire M, Orsel M (2020) Pre-harvest climate and post-harvest acclimation to cold prevent from superficial scald development in Granny Smith apples. Sci. Rep. 10: 6180.
  • Marc M.,  Cournol M.,  Hanteville S., Poisson A,-S,, Guillou M,-,C,  Pelletier S.,  Laurens F.,  Tessier C.,  Coureau C., Renou J.-P.,  Delaire M., and  Orsel  M., 2020. Pre-harvest climate and post-harvest acclimation to cold prevent from superficial scald development in Granny Smith apples. Sci Rep. 2020 Apr 10;10(1):6180. doi: 10.1038/s41598-020-63018-3.
  • Marolleau B, Petiteau A, Bellanger MB, Sannier M, Le Pocreau N, Porcher L, Paillard S, Foucher F, Thouroude T, Serres-Giardi L, Aguileta G, Chastellier A, Bonneau C, Le Cam B, Soufflet-Freslon V, Hibrand-Saint Oyant L (2020). Strong differentiation within Diplocarpon rosae strains based on microsatellite markers and greenhouse-based inoculation protocol on Rosa. Plant Pathology 2020;00:1-15 IF5: 2.56; Notoriété Excellente
  • Marolleau B, Petiteau A, Bellanger MN, Sannier M, Le Pocreau N, Porcher L, Paillard S, Foucher F, Thouroude T,  Serres-Giardi L, Aguileta G, Chastellier A,  Bonneau C,  Le Cam B, Soufflet-Freslon V, Hibrand-Saint Oyant L. 2020. Strong differentiation within Diplocarpon rosae strains based on microsatellite markers and greenhouse-based inoculation protocol on Rosa. Plant Pathology doi: 10.1111/ppa.13182
  • Meline V, Brin C, Lebreton G, Ledroit L, Sochard D, Hunault G, Boureau T, Belin E. 2020. A computation method based on the combination of chlorophyll fluorescence parameters to improve the discrimination of visually similar phenotypes induced by bacterial virulence factors. Frontiers in Plant Science 11:213. DOI: 10.3389/fpls.2020.00213
  • Menz I, Lakhwani D, Clotault J, Linde M, Foucher F, Debener T (2020). Analysis of the Rdr1 gene family in different Rosaceae genomes reveals an origin of an R-gene cluster after the split of Rubeae within the Rosoideae subfamily. PLOS ONE 15(1): e0227428. IF5: 3.33; Notoriété Excellente
  • Morinière L, Burlet A, Rosenthal ER, Nesme X, Portier P, Bull CT, Lavire C, Fischer-Le Saux M, Bertolla F. 2020. Clarifying the taxonomy of the causal agent of bacterial leaf spot of lettuce through a polyphasic approach reveals that Xanthomonas cynarae Trébaol 2000 emend. Timilsina et al. 2019 is a later heterotypic synonym of Xanthomonas hortorum Vauterin et al. 1995. Systematic and Applied Microbiology, 43: 126087 DOI 10.1016/j.syapm.2020.126087.
  • Muranty, H., Denancé, C., Feugey, L., Crépin, J.-L., Barbier, Y., Tartarini, S., Ordidge, M., Troggio, M., Lateur, M., Nybom, H., Paprstein, F., Laurens, F., Durel, C.-E., 2020. Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm. BMC Plant Biology 20. https://doi.org/10.1186/s12870-019-2171-6
  • Nietzel T, Mostertz J, Ruberti C, Wagner S, Moseler A, Fuchs P, Müller-Schüssele SJ, Benamar A, Poschet G, Büttner M, Née G, Møller IM, Lillig CH, Macherel D, Finkemeier I, Wirtz M, Hell R, Meyer AJ, Hochgräfe F, Schwarzländer M (2020) Redox-mediated kick-start of mitochondrial energy metabolism drives resource-efficient seed germination. Proceedings of the National Academy of Sciences of The United States America 117: 741-751.
  • Osdaghi E, Rahimi T, Taghavi S.M, Ansari M, Zarei S, Portier P, Briand M, Jacques M-A. 2020.Comparative genomics and phylogenetic analyses suggest several novel species within Clavibacter sp. including non-pathogenic tomato-associated strains. Applied and Environmental Microbiology 86:e02873-19. DOI: 10.1128/aem.02873-19
  • Paes Nunes C.F., Rubin de Oliveira I., Timm Storch T., Rombaldi C.V., Orsel-baldwin M., Renou J.P., Laurens F., Girardi C.L. 2020. Technical benefit on apple fruit of controlled atmosphere influenced by 1-MCP at molecular levels. Molecular genetics and Genomics 295, p1443–1457; doi.org: 10.1007/s00438-020-01712-7
  • Paillat L, Cannavo P, Barraud F, Huché-Thélier L, Guénon R. 2020. Growing medium type affects organic fertilizer mineralization and CNPS microbial enzymz activities. Agronomy 10:1955. doi:10.3390/agronomy 10121955  -  
  • Patocchi A, Wehrli A, Dubuis PH, Auwerkerken A, Leida C, Cipriani G, Passey T, Staples M, Didelot F, Philion V, PeilA, Laszakovits H, Rühmer T, Boeck K, Baniulis D, Klaus Strasser, Vávra R, Guerra W, Masny S,  Ruess F, Le Berre F, Nybom H, Tartarini S, Spornberger A, Pikunova A,  Bus V.G M. 2020. Ten years of VINQUEST: first insight for breeding new apple cultivars with durable apple scab resistance. Plant disease 104 : 2074-81
  • Pellizzaro A, Neveu M, Lalanne D, Ly Vu B, Kanno Y, Seo M, Leprince O, Buitink J (2020) A role for auxin signaling in the acquisition of longevity during seed maturation. New Phytologist 225: 284-296 Doi.org/10.1111/nph.16150 (1 citation)
  • Perrin A, Daccord N, Roquis D, Celton J-M, Vergne E, Bucher E (2020) Divergent DNA methylation signatures of juvenile seedlings, grafts and adult apple trees. Epigenomes. 4: 4. https://doi.org/10.3390/epigenomes4010004
  • Porcher A., Guérin V., Montrichard F., Lebrec A., Lothier L., Vian A. 2020. Ascorbate glutathione-dependent H2O2 scavenging is an important process in axillary bud outgrowth in rosebush. Annals of Botany 126: 1049-1062 https://doi.org/10.1093/aob/mcaa130  
  • Portier P, Pedron J, Taghouti G, Dutrieux C, Barny M-A. 2020. Updated taxonomy of Pectobacterium Genus in the CIRM-CFBP bacterial collection: When newly described species reveal “old” Endemic Population. Microorganisms. 8(9):1441. doi:10. 3390/microorganisms8091441
  • Prado A, Marolleau B, Vaissière BE, Barret M, Torres-Cortes G. 2020. Insect pollination: an ecological process involved in the assembly of the seed microbiota. Sci Rep 10:3575 DOI :10.1038/s41598-020-60591-5.
  • Renzi JP, Duchoslav M, Brus J, Hradilová I, Pechanec V, Václavek T, Machalová J, Hron K, Verdier J, Smýkal P (2020) Physical dormancy release in Medicago truncatula seeds is related to environmental variations. Plants 9: 503. doi.org/10.3390/plants9040503 (not yet cited)
  • Ribeiro B, Lacchini E, Bicalho K, Mertens J, Arendt P, Vanden Bossche R, Calegario G, Gryffroy L, Ceulemans E, Buitink J, Goossens A, Pollier J (2020) A seed-specific regulator of triterpene saponin biosynthesis in Medicago truncatula. The Plant Cell,  DOI: 10.1105/tpc.19.00609 (1 citation)
  • Roth M., Muranty H., Di Guardo M., Guerra W., Patocchi A., Costa  F. (2020) Genomic prediction of fruit texture and training population optimization towards the application of genomic selection in apple. Horticulture Research 7:148 https://doi.org/10.1038/s41438-020-00370-5
  • Samie S, Rasti P, Richard P, Galopin G, Rousseau D, 2020. Toward joint acquisition-Annotation of images with egocentric devices for a lower-cost machine learning application to apple detection. Sensors 2020, 20(15), 4173. https://doi.org/10.3390/s20154173
  • Samiei S, Rasti P, Ly Vu J, Buitink J, Rousseau D (2020) Deep learning-based detection of seedling development. Plant Methods 16, 103. doi.org/10.1186/s13007-020-00647-9
  • Shalinder Kaur . Alain Vian . Shikha Chandel . Harminder Pal Singh .Daizy Rani Batish . Ravinder Kumar Kohli. 2020. Sensitivity of plants to high frequency electromagnetic radiation: cellular mechanisms and morphological changes. Rev Environ Sci Biotechnol. doi.org/10.1007/s11157-020-09563-9
  • Soleti R., Mallegol P., Hilairet G., Frifra M., Perrin F., Dubois-Laurent C., Huet S., Pignon P., Basset L., Geoffriau E., Andriantsitohaina R. (2020). Carrot Genotypes Contrasted by Root Color and Grown under Different Conditions Displayed Differential Pharmacological Profiles in Vascular and Metabolic Cells. Nutrients 12 : 337
  • Tafifet L, Raio A, Holeva MC, Dikhai R, Kouskoussa CO, Cesbron S, Krimi Z. 2020. Molecular characterization of Algerian Erwinia amylovora strains by VNTR analysis and biocontrol efficacy of Bacillus spp. and Pseudomonas brassicacearum antagonists. European Journal of Plant Pathology 156:867-883. DOI: 10.1007/s10658-020-01938-6
  • Tcherkez G, Ben Mariem S, Larraya L, García-Mina JM, Zamarreño AM, Paradela A, Cui J, Badeck FW, Meza D, Rizza F, Bunce J, Han X, Tausz-Posch S, Cattivelli L, Fangmeier A, Aranjuelo I (2020) Elevated CO2 has concurrent effects on leaf and grain metabolism but minimal effects on yield in wheat. Journal of Experimental Botany 71: 5990-6003.
  • Tcherkez G, Carroll A, Abadie C, Mainguet S, Davanture M, Zivy M (2020) Protein synthesis increases with photosynthesis via the stimulation of translation initiation. Plant Science doi: 10.1016/j.plantsci.2019.
  • Wang CD, Fourdin R, Quadrado M, Dargel-Graffin C, Tolleter D, Macherel D, Mireau H (2020) Rerouting of ribosomal proteins into splicing in plant organelles. Proceedings of the National Academy of Sciences of The United States America 117: 29929-29987.
  • Wang M, Zang LL, Jiao FC, Perez-Garcia MD, Oge L, Hamama L, Le Gourrierec J, Sakr S*, Chen JT*. (2020). Sugar Signaling and Post-transcriptional Regulation in Plants: An Overlooked or an Emerging Topic? Frontiers in Plant Science 11. doi : 10.3389/fpls.2020.578096.
  • Wang W, Celton J-M, Buck-Sorlin G, Balzergue S, Bucher E, Laurens F.2020. Skin Color in Apple Fruit (Malus × domestica): Genetic and Epigenetic Insights. Epigenomes 4, 13; doi : 10.3390/epigenomes4030013.
  • Windels D, Dang TT, Chen Z, Verdier J (2020) Snapshot of epigenetic regulation in legumes, Legume Science 1: leg3.60. https://doi.org/10.1002/leg3.60
  • Zang L, Morère-Le Paven MC, Clochard T, Porcher A, Satour P, Mojovic M, Limami AM, Montrichard F. 2020. Nitrate inhibits primary roots growth by reducing accumulation of reactive oxygen species in the root tip in Medicago truncatula. Pl Physiol and Biochem 146: 363-373
  • Zhou N.N., Tang K., Jeauffre J., Thouroude T., Lopez-Arias L., Foucher F., Hibrand-Saint Oyant L. (accepted) Genetic determinism of prickles in rose, Theoretical and Applied Genetics IF5: 4.0; Notoriété Excellente
  • Zinsmeister J, Berriri S, Basso DP, Ly‐Vu B, Dang T‐T, Lalanne D, da Silva EAA, Leprince O, Buitink J (2020) The seed‐specific heat shock factor A9 regulates the depth of dormancy in Medicago truncatula seeds via ABA signaling. Plant Cell and Environment 43(10): 2508-2522 doi.org/10.1111/pce.13853
  • Zinsmeister J, Leprince O, Buitink J  (2020) Molecular and environmental factors regulating seed longevity. Biochemical Journal 477: 305–323. Doi.org/10.1042/BCJ20190165 (2 citations)

Date de modification : 11 septembre 2023 | Date de création : 29 décembre 2021 | Rédaction : IRHS