Know more

About cookies

What is a "cookie"?

A "cookie" is a piece of information, usually small and identified by a name, which may be sent to your browser by a website you are visiting. Your web browser will store it for a period of time, and send it back to the web server each time you log on again.

Different types of cookies are placed on the sites:

  • Cookies strictly necessary for the proper functioning of the site
  • Cookies deposited by third party sites to improve the interactivity of the site, to collect statistics

Learn more about cookies and how they work

The different types of cookies used on this site

Cookies strictly necessary for the site to function

These cookies allow the main services of the site to function optimally. You can technically block them using your browser settings but your experience on the site may be degraded.

Furthermore, you have the possibility of opposing the use of audience measurement tracers strictly necessary for the functioning and current administration of the website in the cookie management window accessible via the link located in the footer of the site.

Technical cookies

Name of the cookie


Shelf life

CAS and PHP session cookies

Login credentials, session security



Saving your cookie consent choices

12 months

Audience measurement cookies (AT Internet)

Name of the cookie


Shelf life


Trace the visitor's route in order to establish visit statistics.

13 months


Store the anonymous ID of the visitor who starts the first time he visits the site

13 months


Identify the numbers (unique identifiers of a site) seen by the visitor and store the visitor's identifiers.

13 months

About the AT Internet audience measurement tool :

AT Internet's audience measurement tool Analytics is deployed on this site in order to obtain information on visitors' navigation and to improve its use.

The French data protection authority (CNIL) has granted an exemption to AT Internet's Web Analytics cookie. This tool is thus exempt from the collection of the Internet user's consent with regard to the deposit of analytics cookies. However, you can refuse the deposit of these cookies via the cookie management panel.

Good to know:

  • The data collected are not cross-checked with other processing operations
  • The deposited cookie is only used to produce anonymous statistics
  • The cookie does not allow the user's navigation on other sites to be tracked.

Third party cookies to improve the interactivity of the site

This site relies on certain services provided by third parties which allow :

  • to offer interactive content;
  • improve usability and facilitate the sharing of content on social networks;
  • view videos and animated presentations directly on our website;
  • protect form entries from robots;
  • monitor the performance of the site.

These third parties will collect and use your browsing data for their own purposes.

How to accept or reject cookies

When you start browsing an eZpublish site, the appearance of the "cookies" banner allows you to accept or refuse all the cookies we use. This banner will be displayed as long as you have not made a choice, even if you are browsing on another page of the site.

You can change your choices at any time by clicking on the "Cookie Management" link.

You can manage these cookies in your browser. Here are the procedures to follow: Firefox; Chrome; Explorer; Safari; Opera

For more information about the cookies we use, you can contact INRAE's Data Protection Officer by email at or by post at :


24, chemin de Borde Rouge -Auzeville - CS52627 31326 Castanet Tolosan cedex - France

Last update: May 2021

Menu Logo Principal Institut Agro Rennes-Angers Angers University   IRHS


Publications & COV


  • Koutouan CE, Le Clerc V, Suel A, Hamama L, Claudel P, Halter D, Baltenweck R, Hugueney P, Chich JF, Moussa SA, Champlain C, Huet S, Voisine L, Pelletier S, Balzergue S, Chevalier W, Geoffriau E, Briard M. (2023) Co-Localization of Resistance and Metabolic Quantitative Trait Loci on Carrot Genome Reveals Fungitoxic Terpenes and Related Candidate Genes Associated with the Resistance to Alternaria dauci. Metabolites. Jan 2;13(1). doi: 10.3390/metabo13010071. 


  • Guillou MC, Vergne E, Aligon S, Pelletier S, Simonneau F, Rolland A, Chabout S, Mouille G, Gully K, Grappin P, Montrichard F, Aubourg S, Renou JP. (2022) The peptide SCOOP12 acts on reactive oxygen species homeostasis to modulate cell division and elongation in Arabidopsis primary root. J Exp Bot. Oct 18;73(18):6115-6132. 
  • Ortega-Cuadros M, De Souza TL, Berruyer R, Aligon S, Pelletier S, Renou JP, Arias T, Campion C, Guillemette T, Verdier J, Grappin P. (2022) Seed Transmission of Pathogens: Non-Canonical Immune Response in Arabidopsis Germinating Seeds Compared to Early Seedlings against the Necrotrophic Fungus Alternaria brassicicola. Plants (Basel). Jun 28;11(13). 
  • Zang L, Tarkowski ŁP, Morère-Le Paven MC, Zivy M, Balliau T, Clochard T, Bahut M, Balzergue S, Pelletier S, Landès C, Limami AM, Montrichard F. (2022) The Nitrate Transporter MtNPF6.8 Is a Master Sensor of Nitrate Signal in the Primary Root Tip of Medicago truncatula. Front Plant Sci.13:832246. 


  • Perchepied L, Chevreau E, Ravon E, Gaillard S, Pelletier S, Bahut M, Berthelot P, Cournol R, Schouten HJ, Vergne E. (2021) Successful intergeneric transfer of a major apple scab resistance gene (Rvi6) from apple to pear and precise comparison of the downstream molecular mechanisms of this resistance in both species. BMC Genomics. Nov 22;22(1):843.
  • N'Guyen GQ, Raulo R, Porquier A, Iacomi B, Pelletier S, Renou JP, Bataillé-Simoneau N, Campion C, Hamon B, Kwasiborski A, Colou J, Benamar A, Hudhomme P, Macherel D, Simoneau P, Guillemette T. (2021) Responses of the Necrotrophic Fungus Alternaria brassisicola to the Indolic Phytoalexin Brassinin. Front Plant Sci.11:611643. doi: 10.3389/fpls.2020.611643.


  • Adams K, Araújo W, Aubourg S, Baginsky S, Bakker E, Bärenfaller K, Batley J, Beale M, Beilstein M, Belkhadir Y, Mendel G, Berardini T, Bergelson J, Blanco‐herrera F, Brady S, Braun HP, Briggs S, Brownfield L, Cardarelli M, Castellanos‐uribe M, Coruzzi G, Dassanayake M, de Jaeger G, Dilkes B, Doherty C, Ecker J, Edger P, Edwards D, El Kasmi F, Eriksson M, Exposito‐alonso M, Falter‐braun P, Fernie A, Ferro M, Fiehn O, Friesner J, Greenham K, Guo Y, Hamann T, Hancock A, Hauser MT, Heazlewood J, Ho CH, Hõrak H, Huala E, Hwang I, Iuchi S, Jaiswal P, Jakobson L, Jiang Y, Jiao Y, Jones A, Kadota Y, Khurana J, Kliebenstein D, Knee E, Kobayashi M, Koch M, Krouk G, Larson T, Last R, Lepiniec L, Li S, Lurin C, Lysak M, Maere S, Malinowski R, Maumus F, May S, Mayer K, Mendoza‐cozatl D, Mendoza‐poudereux I, Micol JL, Millar H, Mock HP, Mukhtar K, Mukhtar S, Murcha M, Nakagami H, Nakamura Y, Nicolov L, Nikolau B, Nowack M, Nunes‐nesi A, Palmgren M, Parry G, Patron N, Peck S, Pedmale U, Perrot‐rechenmann C, Pieruschka R, Pío‐beltrán J, Pires JC, Provart N, Rajjou L, Reiser L, Rhee S, Rigas S, Rolland N, Romanowski A, Savaldi‐goldstein S, Schmitz R, Schulze W, Seki M, Shimizu K, Slotkin K, Small I, Somers D, Sozzani R, Spillane C, Srinivasan R, Taylor N, Tello‐ruiz MK, Thelen J, Tohge T, Town C, Toyoda T, Uzilday B, Walley J, Ware D, Weckwerth W, Whitelegge J, Wienkoop S, Wright C, Wrzaczek M, Yamazaki M, Yanovsky M, Žárský V, Zhong X, Peer Y, Wijk K, Gillhaussen P (2020) Current status of the multinational Arabidopsis community. Plant Direct.4 (7), e00248
  • Foucher J, Ruh M, Préveaux A, Carrère S, Pelletier S, Briand M, Serre RF, Jacques MA, Chen NWG (2020) Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis. BMC Genomics. 21(1):566
  • Lallemand T, Leduc M, Landès C, Rizzon C, Lerat E (2020) An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice. Genes. 11: 1046.
  • Marc M, Cournol M, Hanteville S, Poisson AS, Guillou MC, Pelletier S, Laurens F, Tessier C, Coureau C, Renou JP, Delaire M, Orsel M (2020) Pre-harvest climate and post-harvest acclimation to cold prevent from superficial scald development in Granny Smith apples. Sci Rep. 10:6180
  • N'Guyen GQ, Raulo R, Porquier A, Iacomi B, Pelletier S, Renou JP, Bataillé-Simoneau N, Campion C, Hamon B, Kwasiborski A, Colou J, Benamar A, Hudhomme P, Macherel D, Simoneau P, Guillemette T. (2020) Responses of the Necrotrophic Fungus Alternaria brassisicola to the Indolic Phytoalexin Brassinin. Front Plant Sci. 11:611643
  • Perrin A, Daccord N, Roquis D, Celton JM, Vergne E, Bucher E (2020) Divergent DNA methylation signatures of juvenile seedlings, grafts and adult apple trees. Epigenomes. 4:4


  • Chambon A, Boureau T, Lardeux F, Saubion F (2019) Accelerated algorithm for computation of all patternz in logical analysis of data. Proceedings ICPRAM. 1:210-220
  • Denancé N, Briand M, Gaborieau R, Gaillard S, Jacques MA. (2019) Identification of genetic relationships and subspecies signatures in Xylella fastidiosa. BMC Genomics. 20(1), 1–21
  • Dupas E, Briand M, Jacques MA, & Cesbron, S (2019) Novel tetraplex qPCR assays for simultaneous detection and identification of Xylella fastidiosa subspecies in plant tissues. Frontiers in plant Science. in press
  • Ferreira MASV, Bonneau S, Briand M, Cesbron S, Portier P, Darrasse A, Gama MAS, Barbosa MAG, Mariano RdLR, Souza EB and Jacques MA (2019) Xanthomonas citri pv. viticola Affecting Grapevine in Brazil: Emergence of a Successful Monomorphic Pathogen. Front. Plant Sci. 10:489
  • Gully K, Celton J-M, Degrave A, Pelletier S, Brisset M-N, Bucher E (2019) Biotic stress-induced priming and de-priming of transcriptional memory in Arabidopsis and Apple. Epigenomes3(1), 3
  • Meline V, Delage W, Brin C, Li-Marchetti C, Sochard D, Arlat M, Rousseau C, Darrasse A, Briand M, Lebreton G, Portier P, Fischer-Le Saux M, Durand K, Jacques M-A, Belin E, Boureau T (2019) Role of the acquisition of a Type 3 Secretion System in the emergence of novel pathogenic strains of Xanthomonas. Molecular Plant Pathology. 20:33-50
  • N'Guyen GQ, Raulo R, Marchi M, Agustí-Brisach C, Iacomi B, Pelletier S, Renou JP, Bataillé-Simoneau N, Campion C, Bastide F, Hamon B, Mouchès C, Porcheron B, Lemoine R, Kwasiborski A, Simoneau P, Guillemette T. (2019) Responses to Hydric Stress in the Seed-Borne Necrotrophic Fungus Alternaria brassicicola. Frontiers in Microbiollogy. 30;10:1969
  • Pelletier S, Gully K, Guillou M-C, Ferrand M, Aligon S, Pokotylo I, Perrin A, Vergne E, Fagard M, Ruelland E, Grappin P, Bucher E, Renou J-P, Aubourg S (2019) The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana. Journal of Exp Botany. 70(4)
  • Torres-Cortés G, Garcia BJ, Compant S, Rezki S, Jones P, Préveaux A, Briand M4, Roulet A5, Bouchez O5, Jacobson D2, Barret M4. (2019) Differences in resource use lead to coexistence of seed-transmitted microbial populations. Sci Rep. 9:e6648
  • Rochefort R, Briand M, Marais C, Wagner MH, Laperche A, Vallee P, Barret M, Sarniguet A (2019) Influence of Environment and Host Plant Genotype on the Structure and Diversity of the Brassica napus Seed Microbiota. Phytobiomes.


  • Ahmadi-Afzadi M, Orsel M, Pelletier S, Bruneau M, Proux-Wéra E, Nybom H, Renou JP (2018) Genome-wide expression analysis suggests a role for jasmonates in the resistance to blue mold in apple. Plant Growth Regulation. 85:375-387
  • Berthelier J, Casse N, Daccord N, Jamilloux V, Saint-Jean B, Carrier G (2018) A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea. BMC Genomics. 19(1):378
  • Chen NWG, Serres-Giardi L, Ruh M, Briand M, Bonneau S, Darrasse A, Barbe V, Gagnevin L, Koebnik R, Jacques M-A (2018) Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean. BMC Genomics. 19:606
  • Dall'Agata M, Pagliarani G, Padmarasu S, Troggio M, Bianco L, Dapena E, Miñarro M, Aubourg S, Lespinasse Y, Durel C-E, Tartarini S (2018) Identification of candidate genes at the Dp-fl locus conferring resistance against the rosy apple aphid Dysaphis plantaginea. Tree Genetics & Genomes. 14:12
  • Hibrand Saint-Oyant L, Ruttink T, Hamama L, Kirov I, Lakhwani D, Zhou NN, Bourke PM, Daccord N, Leus L, Schulz D, Van de Geest H, Hesselink T, Van Laere K, Debray K, Balzergue S, Thouroude T, Chastellier A, Jeauffre J, Voisine L, Gaillard S, Borm TJA, Arens P, Voorrips RE, Maliepaard C, Neu E, Linde M, Le Paslier MC, Bérard A, Bounon R, Clotault J, Choisne N, Quesneville H, Kawamura K, Aubourg S, Sakr S, Smulders MJM, Schijlen E, Bucher E, Debener T, De Riek J, Foucher F (2018) A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits. Nature Plants. 4:473-484
  • Legeay M, Aubourg S, Renou J-P, Duval B (2018) Large scale study of anti-sense regulation by differential network analysis. BMC Systems Biology. 12:95
  • Osdaghi E, Portier P, Briand M, Taghouti G, Jacques M-A. (2018) Draft genome sequences of the type strains of three Clavibacter subspecies and atypical peachcolored strains isolated from tomato. Microbiol Resour Announc. 7:e01357-18
  • Rigaill G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis-Rabusseau C, Soubigou-Taconnat L, Aubourg S, Lurin C, Martin-Magniette ML, Delannoy E (2018) Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis. Brief Bioinform. 19(1):65-76.
  • Soleti R, Hilairet G, Mallegol P, Dourguia C, Frifra M, Guillou MC, Gacel A, Guyot S, Pignon P, Basset L, Cadot Y, Renou JP, Orsel M, Andriantsitohaina R (2018) Screening of ordinary commercial varieties of apple fruits under different storage conditions for their potential vascular and matabolic protective properties. Food Funct. 9(11):5855-5867
  • Torres-Cortés G, Bonneau S, Bouchez O, Genthon C, Briand M, Jacques M-A and Barret M (2018) Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence. Front. Plant Sci. 9:902
  • Warneys R, Gaucher M, Robert P, Aligon S, Anton S, Aubourg S, Barthes N, Braud F, Cournol R, Gadenne C, Heintz C, Brisset M-N, Degrave A (2018) Acibenzolar-S-methyl reprograms apple transcriptome towards resistance to rosy apple aphid. Frontiers in Plant Science. 9:1975


  • Daccord N, Celton J-M, Linsmith G, Becker C, Choisne N, Schijlen E, van de Geest H, Bianco L, Micheletti D, Velasco R, Di Pierro E, Gouzy J, Rees J, Muranty H, Durel C-E, Laurens F, Lespinasse Y, Gaillard S, Aubourg S, Quesneville H, Weigel D, van de Weg E, Troggio M, Bucher E (2017) High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nature Genet. 49(7): 1099-1106.
  • Denance N, Legendre B, Briand M, Olivier V, de BoissesonC, Poliakoff F, Jacques MA. (2017) Several subspecies and sequence types are associated with the emergence of Xylella fastidiosa in natural settings in France. Plant Pathology. 66:1054–1064
  • Goyet V, Billard E, Pouvreau JB, Lechat MM, Pelletier S, Bahut M, Monteau F, Spíchal L, Delavault P, Montiel G, Simier P. (2017) Haustorium initiation in the obligate parasitic plant Phelipanche ramosa involves a host-exudated cytokinin signal. J Exp Bot. 68(20):5539-5552.
  • Lima JJP, Buitink J, Lalanne D, Rossi RF, Pelletier S, da Sivla EAA, Leprince 0 (2017) Molecular characterization of the acquisition of longevity during seed maturation in soybean. Plos One. 12(7):e0180282
  • Merda D, Briand M, Bosis E, Rousseau C, Portier P, Barret M, Jacques MA, Fischer-Le Saux M (2017) Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens. Molecular Ecology. 26:5939-5952
  • Ruh M, Briand M, Bonneau S, Jacques MA, Chen NWG. (2017) Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors. BMC Genomics . 18:670
  • Ruh M, Briand M, Bonneau S, Jacques MA, Chen NWG. (2017) First Complete Genome Sequences of Xanthomonas citri pv. vignicola Strains CFBP7111, CFBP7112, and CFBP7113 Obtained Using Long-Read Technology. Genome Announcements. 5:e00813-17
  • Storch TT, Finatto T, Bruneau M, Orsel-Baldwin M, Renou JP, Rombaldi CV, Quecini V, laurens F, Girardi CL (2017) Constrasting transcriptionnal programs control postharvest development od apples (Malus x domestica Borkh.) submitted to cold storage and ethylene blockage. J Agric. Food Chem. 65(35):7813-7826
  • Thieme M, Lanciano S, Balzergue S, Daccord N, Mirouze M, Bucher E (2017) Inhibition of RNA polymerase II allows controlled mobilization of retrotransposons for plant breeding. Genome Biol. 18(1):134
  • Urrestarazu J, Muranty H, Denancé C, Leforestier D, Ravon E, Guyader A, Guisnel R, Feugey L, Aubourg S, Celton J-M, Daccord N, Dondini L, Gregori R, Lateur M, Houben P, Ordidge M, Paprstein F, Sedlak J, Nybom H, Garkava-Gustavson L, Troggio M, Bianco L, Velasco R, Poncet C, Theron A, Moriya S, Bink M, Laurens F, Tartarini S, Durel C-E (2017) Genome-wide association mapping of flowering and ripening periods in apple. Frontiers in Plant Science. 8:1923.


  • Chetouhi C, Bonhomme L, Lasserre-Zuber P, Cambon F, Pelletier S, Renou JP, Langin T. 2016.  Transcriptome dynamics of a susceptible wheat upon Fusarium head blight reveals that molecular responses to Fusarium graminearum infection fit over the grain development processes. Funct Integr Genomics.Mar;16(2):183-201.
  • Cunty A, Cesbron S, Briand M, Carrère S, Poliakoff  F, Jacques MA, Manceau C (2016) Draft genome sequences of five Pseudomonas syringae  pv. actinidifoliorum strains isolated in France. Brazilian Journal of Microbiology. 47(3):529-30
  • Dheilly E, Gall SL, Guillou MC, Renou JP, Bonnin E, Orsel M, Lahaye M (2016) Cell wall dynamics during apple development and storage involves hemicellulose modifications and related expressed genes. BMC Plant Biol. 16(1):201
  • Jacques M-A, Denancé N, Legendre B, Morel E, Briand M, Mississipi S, Durand K, Olivier V, Portier P, Poliakoff F, Crouzillat D (2016) New variants of coffee-infecting Xylella fastidiosa issued from homologous recombination. Appl. Environ. Microbiol. 82:1556-1568.
  • Legeay M, Duval B, Renou J-P (2016) Inference and differential analysis of extended core networks : a way to study anti-sense regulation. IEEE International conference in Bioinformatics and Biomedecine. BIBM 15-18/12/2016
  • Legeay M, Duval B, Renou J-P (2016) Differential functional analysis and change motifs in gene networks to explore the role of Anti-sense transcription. Bioinformatics research and applications. 117-126. ISBN 978-3-319-38782-6
  • Liorzou M, Pernet A, Li S, Chastellier A, Thouroude T, Michel G, Malécot V, Gaillard S, Briée C, Foucher F, Oghina-Pavie C, Clotault J, Grapin A (2016) Nineteenth century French rosee (Rosa sp) germplasm shows a shift over time from a European to an Asian genetic background. Journal of Exp. Botany. 67(15):4711-25
  • Rezki S, Campion C, Iacomi-Vasilescu B, Préveaux A, Toualbia Y, Bonneau S, Briand M, Laurent E, Hunault G, Simoneau P, Jacques MA, Barret M (2016) Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms. PeerJ. 4:e1923
  • Zhang H, Dugé de Bernonville T, Body M, Glevarec G. Reichelt M, Unsicker S, Bruneau M, Renou J.P, Huguet E, Dubreuil G. & Giron D. (2016) Leaf-mining by Phyllonorycter blancardella reprograms the host-leaf transcriptome to modulate phytohormones associated with nutrient mobilization and plant defense. Journal of Insect Physiology. In Press


  • Barret M, Briand M, Bonneau S, Préveaux A, Valière S, Bouchez O, Hunault G, Simoneau P, Jacques MA.2015. Emergence shapes the structure of the seed-microbiota. Appl. Environ. Microbiol. 81 (4) : 1257-1266
  • Cesbron C, Briand M, Essakhi S, Gironde S, Boureau T, Manceau C, Fischer-Le Saux M, Jacques MA. (2015) Comparative genomics of pathogenic and nonpathogenic strains of Xanthomonas arboricola unveil molecular and evolutionary events linked to pathoadaptation. Frontiers in Microbiology. 6:1126.
  • Chambon A, Boureau T, Lardeux F, Saubion F, Le Saux M (2015) Characterization of multiple groups of data. IEEE International conference on (ICTAI). p1021-1028
  • Porto D.D., Bruneau M., Perini P., Anzanello R., Renou J.P., Santos H.P., Fialho F.B. & Revers L.F. .2015. Transcription profiling of the chilling requirement for bud break in apples: a putative role for FLC-like genes. Journal of Experimental Botany.66(9):2659-72.
  • Righetti K, Vu JL, Pelletier S, Vu BL, Glaab E, Lalanne D, Pasha A, Patel RV, Provart NJ, Verdier J, Leprince O, Buitink J.2015. Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways. Plant Cell, Sep 26. pii: tpc.15.00632.
  • Roman H., Rapicault M., Miclot A.S., Larenaudie M., Kawamura K., Thouroude T., Chastellier A., Lemarquand A., Dupuis F., Foucher F., Lousteau S., Hibrand-Saint Oyant L. 2015. Genetic analysis of the flowering date and number of petals in rose. Tree Genetics and Genomes. DOI :10.1007/s11295-015-0906-6
  • Rousseau C, Hunault G, Gaillard S, Bourbeillon J, Montiel G, Simier P, Campion C, Jacques MA, Belin E, Boureau T.2015. Phenoplant: A web resource for the exploration of large Chlorophyll Fluorescence Image datasets. Plant methods. 0.475
  • Terrasson E, Darrasse A, Righetti K, Buitink J, Lalanne D, Ly Vu B, Pelletier S, Bolingue W, Jacques M-A, Leprince O.2015. Identification of a molecular dialogue between developing seeds of Medicago truncatula and seedborne xanthomonads. Journal of Experimental Botany. 66(13):3737-52.
  • Zaag R., Tamby J.P., Guichard C., Tariq Z., Rigaill G., Delannoy E., Renou J.P., Balzergue S., Mary-Huard T., Aubourg S., Martin-Magniette M.L. & Brunaud V. 2015. GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response. Nucleic Acids Res. Jan;43(Database issue):D1010-7
  • Zhang H., Dugé de Bernonville T., Body M., Glevarec G. Reichelt M., Unsicker S., Bruneau M., Renou J.P., Huguet E., Dubreuil G. & Giron D. 2015. Leaf-mining by Phyllonorycter blancardella reprograms the host-leaf transcriptome to modulate phytohormones associated with nutrient mobilization and plant defense. Journal of Insect Physiology. 84:114-127.


  • Arias MC, Pelletier S, Hilliou F, Wattebled F, Renou JP & Christophe D'Hulst C. 2014. From dusk till dawn: the Arabidopsis thaliana sugar starving responsive network. Frontiers in Plant Science. Sep 22;5:482. doi: 10.3389/fpls. 2014. 00482
  • Aznar A., Chen N., Rigault M., Thomine S., Renou J.P., Soubigou-Taconnat L., Desmaële D., Joseph D., Mouille G., Boutet S. & Dellagi A. 2014. Scavenging iron: a novel mechanism of plant immunity activation by microbial siderophores. Plant Physiology.Apr;164(4):2167-83
  • Celton JM, Dheilly E, Guillou MC, Simonneau F, Juchaux M, Costes E, Laurens F, Renou JP. 2014. Additional amphivasal bundles in pedicel pith exacerbate central fruit dominance and induce self-thinning of lateral fruitlets in apple. Plant Physiology.Apr;164(4):1930-51
  • Celton JM, Gaillard S, Bruneau M, Pelletier S, Aubourg S, Martin-Magniette ML, Navarro L, Laurens F, Renou JP. 2014. Widespread anti-sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post-transcriptional control. New Phytolologist. Jul; 203(1):287-99
  • Doustaly F., Combes F., Fiévet J, Berthet S., Hugouvieux V., Bastien O., Aranjuelo I., Leonhardt N., Rivasseau C., Carrière M., Vavasseur A., Renou J.P., Vandenbrouck Y. & Bourguignon J. 2014. Uranium perturbs signaling and iron uptake response in Arabidopsis thaliana roots. Metallomics. Mar 26;6(4):809-21
  • Dutheil JY, Gaillard S, Stukenbrock EH. 2014. MafFilter: a highly flexible and extensible multiple genome alignment files processor. BMC Genomics. 15:53
  • Jammes F., Leonhardt N., Tran D., Bousserouel H., Véry A.A., Renou J.P., Vavasseur A., Kwak J.M., Sentenac H., Bouteau F. & Leung J. 2014. Acetylated 1,3-diaminopropane antagonizes abscisic acid-mediated stomatal closing in Arabidopsis (97). Plant Journal. May 29. doi: 10.1111/tpj.12564
  • Mikol-Segonne S., Bruneau M., Celton J.M., Le Gall S., Francin-Allami M., Juchaux M., Laurens F., Orsel M. & Renou J.P. BMC Plant Biology. 14:1593. DOI: 10.1186/s12870-014-0375-3. 2014. Multiscale investigation of mealiness in apple: an atypical role for a pectin methylesterase during fruit maturation. BMC Plant Biology. Dec 31;14:375
  • Mondy S, Lenglet A, Cosson V, Pelletier S, Pateyron S, Gilard F, Scholte M, Brocard L, Couzigou JM, Tcherkez G, Péan M, Ratet P. 2014. GOLLUM [FeFe]-hydrogenase-like proteins are essential for plant development in normoxic conditions and modulate energy metabolism. Plant Cell & Environment.37:54-69
  • Planchais S., Cabassa C., Toka I., Justin A.M., Renou JP, Savouré A. & Carol P. 2014. BASIC AMINO ACID CARRIER 2 gene expression modulates arginine and urea content and stress recovery in Arabidopsis leaves. Frontiers in Plant Science. Jul 16; 5:330.
  • Santagostini P., Demotes-Mainard S., Huché-Thélier L., Leduc N., Bertheloot J., Guérin V., Bourbeillon J., Sakr S.,Boumaza R. 2014. Assessment of the visual quality of ornamental plants: Comparison of three methodologies in the case of the rosebush. Scientia Horticulturae.168, 17-26
  • Verdu C.F., Guyot S., Childebrand N., Bahut M., Celton J.M., Gaillard S., Lasserre-Zuber P. Troggio M., Guilet D., Laurens F. 2014. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS One. 9(10): e107103
  • Vergne E, Dugé de Bernonville T, Dupuis F,  Sourice S, Cournol R, Berthelot P,  Barny MA, Brisset MN, Chevreau E. 2014. Membrane targeted HrpNEa can modulate apple defense gene expression. Molecular Plant-Microbe interactions. 27: 125-135


  • Chupeau M.C., Granier F., Pichon O., Renou J.P., Gaudin V. & Chupeau Y. 2013 .Characterization of the Early Events leading to Totipotency in an Arabidopsis Protoplast Liquid Culture by Temporal Transcript Profiling.Plant Cell,Jul 31. [Epub ahead of print].
  • Gueguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K,Dutheil JY  2013 Bio++: efficient extensible libraries and tools for computational molecular evolution Molecular biology and evolution 30(8):1745-1750
  • Verdier J, Pelletier S, Lalanne D, Torres-Jerez I, Righetti K, Bandyopadhyay K, Leprince O, Chatelain E, Ly Vu B, Gouzy J, Gamas P, Udvardi M, and Buitink J 2013 A regulatory network-based approach dissects late maturation processes related to the acquisition of desiccation tolerance and longevity of Medicago truncatula seeds Plant Physiology pp.113.222380v1-pp.113.222380.
  • Ranocha P., Dima O., Nagy R., Felten J., Corratgé-Faillie C., Novák O., Morreel K., Lacombe B., Martinez Y., Pfrunder S., Jin X., Renou J.-P., Thibaud J.-B., Ljung K., Fischer U., Martinoia E., Boerjan W. & Goffner D. 2013 .Arabidopsis WAT1 is a vacuolar auxin transport facilitator required for auxin homeostasis.Nature Communications, 4:625


  • Dutilleul C, Benhassaine-Kesri G, Demandre C, Rézé N, Launay A, Pelletier S, Renou JP, Zachowski A, Baudouin E, Guillas I. 2012 Phytosphingosine-phosphate is a signal for AtMPK6 activation and Arabidopsis response to chilling. New Phytolologist Apr;194(1):181-91.
  • Petriacq P, de Bont L, Hager J, Didierlaurent L, Mauve C, Guerard F, Noctor G, Pelletier S, Renou JP, Tcherkez G, Gakiere B. 2012 Inducible NAD overproduction in Arabidopsis alters metabolic pools and gene expression correlated with increased salicylate content and resistance to Pst-AvrRpm1. Plant Journal May;70(4):650-65.
  • Denancé N, Ranocha P, Oria N, Barlet X, Rivière MP, Yadeta KA, Hoffmann L, Perreau F, Clément G, Maia-Grondard A, van den Berg GC, Savelli B, Fournier S, Aubert Y, Pelletier S, Thomma BP, Molina A, Jouanin L, Marco Y, Goffner D. 2012 Arabidopsis wat1 (walls are thin1)-mediated resistance to the bacterial vascular pathogen, Ralstonia solanacearum, is accompanied by cross-regulation of salicylic acid and indole metabolism Plant Journal 73(2):225-39
  • Fontaine JX, Tercé-Laforgue T, Armengaud P, Clément G, Renou JP, Pelletier S, Catterou M, Azzopardi M, Gibon Y, Lea PJ, Hirel B, Dubois F. 2012 Characterization of a NADH-Dependent Glutamate Dehydrogenase Mutant of Arabidopsis Demonstrates the Key Role of this Enzyme in Root Carbon and Nitrogen Metabolism. Plant Cell 24(10):4044-65


  • Schikora A, Virlogeux-Payant I, Bueso E, Garcia AV, Nilau T, Charrier A, Pelletier S, Menanteau P, Baccarini M, Velge P, Hirt H. 2011 Conservation of Salmonella infection mechanisms in plants and animals. PLoS One 6(9):e24112
  • Jay F, Wang Y, Yu A, Taconnat L, Pelletier S, Colot V, Renou JP, Voinnet O. 2011 Misregulation of AUXIN RESPONSE FACTOR 8 underlies the developmental abnormalities caused by three distinct viral silencing suppressors in Arabidopsis. PLoS Pathog. May;7(5):e1002035
  • Cheminant S, Wild M, Bouvier F, Pelletier S, Renou JP, Erhardt M, Hayes S, Terry MJ, Genschik P, Achard P. 2011 DELLAs regulate chlorophyll and carotenoid biosynthesis to prevent photooxidative damage during seedling deetiolation in Arabidopsis. Plant Cell May;23(5):1849-60.
  • Vandecasteele C, Teulat-Merah B, Morère-Le Paven MC, Leprince O, Ly Vu B, Viau L, Ledroit L, Pelletier S, Payet N, Satour P, Lebras C, Gallardo K, Huguet T, Limami AM, Prosperi JM, Buitink J. 2011 Quantitative trait loci analysis reveals a correlation between the ratio of sucrose/raffinose family oligosaccharides and seed vigour in Medicago truncatula. Plant Cell Environ. Sep;34(9):1473-87.