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Home Page Publications 2016

2016

  • Allard A., Bink M.C., Martinez S., Kelner JJ, Kegave JM, di Guardo M., di Pierro EA, Laurens F, vand de Weg EW, Costes E,  2016. Detecting QTLs and putative candidate genes involved in budbreak and flowering time in an apple multiparental population. J Exp Bot. J Exp Bot. 2016 Apr;67(9):2875-88. doi: 10.1093/jxb/erw130.
  • Antonio C., Päpke C., Rocha M., Diab H., Limami AM., Obata T., Fernie AR., van Dongen JT. 2016. Regulation of primary metabolism in response to low oxygen availability as revealed by carbon and nitrogen isotope redistribution. Plant Physiology . 170: 43-56.
  • Barret M, Guimbaud JF, Darrasse A, Jacques MA.  2016. Plant microbiota affects seed transmission of phytopathogenic micro-organisms.. Mol Plant Pathol. doi: 10.1111/mpp.12382.
  • Baumgartner I.O., … Laurens F., Patocchi A. 2016. Development of SNP-based assays for disease resistance and fruit quality traits in apple (Malus x domestica Borkh.) and validation in breeding pilot studies. Tree Genetics and Genomes. Tree Genetics and Genomes , 2016, 12 (3) : 1-21..
  • Bessadat N, Hamon B, Henni D.E., Simoneau P 2016. First report of tomato early blight caused by Alternaria grandis in Algeria. Plant Disease. 100(2): 533.
  • Bianco L., Cestaro A., Linsmith G., Muranty H., Denancé C., Théron A., Poncet C., Micheletti D., Kerschbamer E., Di Pierro E.A., Larger S., Pindo M., van de Weg W.E., Davassi A., Laurens F., Velasco R., Durel C.E., Troggio M. 2016. Development and validation of the Axiom®Apple480K SNP genotyping array. The Plant Journal. 86:62-74. DOI: 10.1111/tpj.13145
  • Bobille H., Limami AM., Robins RJ., Cukier C., Le Floch G., Fustec J. 2016. Evolution of the amino acid fingerprint in the unsterilized rhizosphere of a legume in relation to plant maturity. Soil Biology and Biochemistry. 101: 226-236.
  • Bonants, P. Streito, J. C. Elphinstone, J. Pottier, P. Robert, V. Bluemel, S. van der Blom, M. Gentit, P. de Vos, P. Petter, F. 2016. Q-collect: results of a European Union project to improve the status of reference collections important for plant health. EPPO Bulletin. 46 (2) : 348-358. 10.1111/epp.12295
  • Boursier, J., Mueller, O., Barret, M., Machado, M., Fizanne, L., Araujo-Perez, F., Guy, C. D., Seed, P. C., Rawls, J. F., David, L. A., Hunault, G., Oberti, F., Cales, P., Diehl, A. M. 2016. The Severity of Nonalcoholic Fatty Liver Disease Is Associated With Gut Dysbiosis and Shift in the Metabolic Function of the Gut Microbiota. Hepatology. 63 (3), 764 - 775. DOI : 10.1002/hep.28356
  • Brun, L., Combe, F., Hubert, A., Gros, C., Asencio, P., Greil, M.-L., Gazel, F., Carrie, S., Lemarquand, A., Orain, G., Laurens, F. 2016. Des variétés de pommier testées en stratégie « bas-intrants ». Phytoma. Phytoma (2012-); 2016 : 12-16.
  • Caffier V, Le Cam B, Al Rifaï M, Bellanger MN, Comby M, Denancé C, Didelot F, Expert P, Kerdraon T, Lemarquand A, Ravon E, Durel CE 2016. Slow erosion of a quantitative apple resistance to Venturia inaequalis based on an isolate-specific Quantitative Trait Locus. Infection, Genetics and Evolution. 44: 541-548. DOI: 10.1016/j.meegid.2016.07.016
  • Chéné, Y., Rousseau, D., Belin, E., Garbez, M., Galopin, G., Chapeau-Blondeau, F. 2016. Shape descriptors to characterize the shoot of entire plant from multiple side views of a motorized depth sensor. Machine vision and Applications. 27: 447-461.
  • Chetouhi C, Bonhomme L, Lasserre-Zuber P, Cambon F, Pelletier S, Renou JP, Langin T.  2016.  Transcriptome dynamics of a susceptible wheat upon Fusarium head blight reveals that molecular responses to Fusarium graminearum infection fit over the grain development processes.. Funct Integr Genomics.. Mar;16(2):183-201. .
  • Costa MCD , Farrant JM, Oliver MJ, Ligterink W, Buitink J, Hilhorst HMW  2016. Key genes involved in desiccation tolerance and dormancy across life forms. Plant Science . 251: 162-168.
  • Croce V, MJ Pianzzola, K Durand, M González-Arcos, MA Jacques, MI Siri 2016. Multilocus Sequence Typing reveals high variability among Clavibacter michiganensis subsp. michiganensis strains affecting tomato crops in Uruguay.. Eur J Plant Pathol. . 144:1-13. DOI 10.1007/s10658-015-0738-0
  • Cunty A, Cesbron S, Briand M, Carrère S, Poliakoff  F, Jacques MA, Manceau C  2016. Draft genome sequences of five Pseudomonas syringae pv. actinidifoliorum strains isolated in France. Brazilian Journal of Microbiology. 47 :529-530. doi: 10/2016/j.bjm.2016.04.023
  • Denancé N, Lahaye T, and Noël LD.  2016. Editorial: Genomics and effectomics of the crop killer Xanthomonas. . Front. Plant Sci.. 7:71.
  • Dheilly E; Le Gall S; Guillou MC; Renou JP; Bonnin E; Orsel M; Lahaye M. 2016. Cell wall dynamics during apple development and storage involves hemicellulose modifications and related expressed genes.. BMC Plant Biology. Sep 15;16(1):201. doi: 10.1186/s12870-016-0887-0..
  • Di Pierro E.A., Gianfranceschi L., Di Guardo M., Koehorst - van Putten H.J.J., Kruisselbrink J.W., Longhi S., Troggio M., Bianco L., Muranty H., Pagliarani G., Tartarini S., Letschka T., Lozano Luis L., Garkava-Gustavsson L., Micheletti D., Bink M.C.A.M., Voorrips R.E., Aziz E., Velasco R., Laurens F., van de Weg  E. 2016. A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species. Horticulture Research. 3: 16057. doi:10.1038/hortres.2016.57"
  • Diab H., Limami AM. 2016. Reconfiguration of N Metabolism upon Hypoxia Stress and Recovery: Roles of Alanine Aminotransferase (AlaAT) and Glutamate Dehydrogenase (GDH). Plants. 5(2): 25.
  • Didelot F, Caffier V, Orain G, Lemarquand A, Parisi L 2016. Sustainable management of scab control through the integration of apple resistant cultivars in a low-fungicide input system. AGRICULTURE, ECOSYSTEMS AND ENVIRONMENT. 217: 41-48, DOI information: 10.1016/j.agee.2015.10.023.
  • Fernandez, V., Takahashi, Y., Le Gourrierec, J., Coupland, G. 2016. Photoperiodic and thermosensory pathways interact through CONSTANS to promote flowering at high temperature under short days. Plant Journal. 86 : 426–440.
  • Giovanardi, D., Bonneau, S., Gironde, S., Fischer-Le Saux, M., Manceau, C., Stefani, E. 2016. Morphological and genotypic features of Xanthomonas arboricola pv. juglandis populations from walnut groves in Romagna region, Italy. European Journal of Plant Pathology. 145:1-16. DOI : 10.1007/s10658-015-0809-2
  • Griffiths S, Mesarich CH, Overdijk EJ, Saccomanno B, de Wit PJ, Collemare J 2016. Down-regulation of cladofulvin biosynthesis is required for biotrophic growth of Cladosporium fulvum on tomato.. Molecular Plant Pathology. doi: 10.1111/mpp.12527.
  • Griffiths S, Mesarich CH, Saccomanno B, Vaisberg A, De Wit PJ, Cox R, Collemare J 2016. Elucidation of cladofulvin biosynthesis reveals a cytochrome P450 monooxygenase required for anthraquinone dimerization.. PNAS. 113(25):6851-6. doi: 10.1073/pnas.1603528113.
  • Henke, M., Kurth, W., & Buck-Sorlin, G. H. 2016. FSPM-P: towards a general functional-structural plant model for robust and comprehensive model development..  Frontiers of Computer Science. 10(6): 1103-1117.
  • Jacques M-A., Arlat M., Boulanger A., Boureau T., Carrère S., Cesbron S., Chen N.W.G., Cociancich S., Darrasse A., Denancé N., Fischer-Le Saux M., Gagnevin L., Koebnik R., Lauber E., Noël L.D., Pieretti I., Portier P., Pruvost O., Rieux A., Robène I., Royer M., Szurek B., Verdier V., Vernière C. 2016. Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas: French Network on Xanthomonads (FNX). Annual Review of Phytopathology. 54:163-187. doi:10.1146/annurev-phyto-080615-100147
  • Jacques M.-A., Denancé N., Legendre B., Morel E., Briand M., Mississipi S., Durand K., Olivier V., Portier P., Poliakoff F., Crouzillat D. 2016. New variants of coffee-infecting Xylella fastidiosa issued from homologous recombination.. Appl. Environ. Microbiol.. 82:1556 –1568. doi:10.1128/AEM.03299-15
  • Jaspard D, Hunault G 2016. “sHSPdb: a database for the analysis of small Heat Shock Proteins.” . BMC Plant Biology. 0.760416666666667.
  • Klaedtke S, Jacques MA, Raggi L, Préveaux A, Bonneau S, Negri V, Chable V, Barret M 2016. Terroir is a key driver of seed-associated microbial assemblages. Environmental Microbiology . 18:1792-1804. doi: 10.1093/jxb/erv167
  • Laloi G., Vergne E., Durel C.E., Le Cam B., Caffier V. 2016. Efficiency of pyramiding of three quantitative resistance loci to apple scab. Plant Pathology. 66:412-422. DOI: 10.1111/ppa.12581
  • Lassois L., Denancé C., Ravon E., Guyader A., Guisnel R., Hibrand-Saint-Oyant L., Poncet C., Lasserre-Zuber P., Feugey L., Durel C.E. 2016. Genetic diversity, population structure, parentage analysis and construction of core collections in the French apple germplasm based on SSR markers. Plant Molecular Biology Reporter. 34:827-844. DOI: 10.1007/s11105-015-0966-7
  • Le Clerc  V., Auperpin E., Suel A., Rousseau D., Belin E., Poupard P., Lambert J.,Voisine L., Hamama L., Boureau T., Berruyer R., Barrot L., Prieur R., Briard M. 2016. Etude de la résistance partielle de la carotte à Alternaria dauci par une approche de phénotypage multi critères .  Innovations Agronomiques.. 50:101-109. doi.org/10.15454/1.4721101706751174E12
  • Legeay M, Duval B, Renou J-P 2016. Inference and differential analysis of extended core networks : a way to study anti-sense regulation. IEEE International conference in Bioinformatics and Biomedecine. BIBM 15-18/12/2016.
  • Legeay M, Duval B, Renou J-P 2016. Differential functional analysis and change motifs in gene networks to explore the role of Anti-sense transcription.. Bioinformatics research and applications.. 117-126 ISBN 978-3-319-38782-6.
  • Leprince O, Pellizzaro A, Berriri S, Buitink J 2016. Late seed maturation: drying without dying . Journal of Experimental Botany. 68:827-841.
  • Leroy T, Caffier V, Celton JM, Anger N, Durel CE, Lemaire C, Le Cam B 2016. When virulence originates from non-agricultural hosts: evolutionary and epidemiological consequences of introgressions following secondary contacts in Venturia inaequalis. New Phytologist. 210: 1443–1452. DOI: 10.1111/nph.13873
  • Lhomme E., Onno B., Chuat V., Durand K., Orain S., Valence-Bertel F., Dousset X., Jacques M.-A.  2016. Genotypic diversity of Lactobacillus sanfranciscensis strains isolated from French organic sourdoughs.. International Journal of Food Microbiology . 226:13-19. doi: 10.1016/j.ijfoodmicro.2016.03.008
  • Liorzou M., Pernet A., Li S., Chastellier A., Thouroude T., Michel G., Malécot V., Gaillard S., Briée C., Foucher F., Oghina-Pavie C., Clotault J., Grapin A. 2016. Nineteenth century French rose (Rosa sp.) germplasm shows a shift over time from a European to an Asian genetic background. Journal of Experimental Botany. 67(15) : 4711-4725. doi:10.1093/jxb/erw269. "
  • López-Soriano P, Boyer K, Cesbron S, Morente M C, Peñalver J, Palacio-Bielsa A, Vernière C, López MM, Pruvost O 2016. Multilocus variable number of tandem repeat analysis reveals multiple introductions in Spain of Xanthomonas arboricola pv. pruni, the causal agent of bacterial spot disease of stone fruits and almond.. PloS one. 11(9), e0163729.
  • Merda D, Bonneau S, Guimbaud JF, Durand K, Brin C, Boureau T, Lemaire C, Jacques M-A, Fischer-LeSaux M. 2016. Recombination-prone bacterial strains form a reservoir from which epidemic clones emerge in agroecosystems.. Environmental Microbiology Reports. 8(5):572-581. doi:10.1111/1758-2229.12397
  • Merda D., Bonneau S., Guimbaud J-F., Durand K., Lemaire C., Jacques M-A. & Fischer-Le Saux M.  2016. Xanthomonas arboricola fits the epidemic bacterial population model with emergence of epidemic clones linked to acquisition of type three effectors upon a recombinant network. Environmental Microbiology Reports. doi: 10.1111/1758-2229.12397..
  • Michel, E., Monfort, C., Deffrasnes, M., Guezenec, S., Lhomme, E., Barret, M., Sicard, D., Dousset, X., Onno, B 2016. Characterization of relative abundance of lactic acid bacteria species in french organic sourdough by cultural, qPCR and MiSeq high-throughput sequencing methods. International Journal of Food Microbiology . 239:35-43. DOI : 10.1016/j.ijfoodmicro.2016.07.034
  • Montanari S., Brewer L., Lamberts R., Velasco R., Malnoy M., Perchepied L., Guérif G., Durel C.E., Bus V.G.M., Gardiner S.E., Chagné D.  2016. Genome mapping of postzygotic hybrid necrosis in an interspecific pear population. Horticulture Research. 3, 15064. DOI: 10.1038/hortres.2015.64 "
  • Montanari S., Perchepied L.,  Renault D., Frijters L., Velasco R., Horner M., Gardiner S.E., Chagné D., Bus V.G.M., Durel C.E., Malnoy M. 2016. A QTL detected in an interspecific pear population confers stable fire blight resistance across different environments and genetic backgrounds. Molecular Breeding. 36:47  . DOI 10.1007/s11032-016-0473-z
  • Pagliarani G., Dapena E., Miñarro M., Denancé C., Lespinasse Y., Rat-Morris E., Troggio M., Durel C.E., Tartarini S. 2016. Fine mapping of the rosy apple aphid Dp-fl resistance  locus on Linkage Group 8 of the apple cultivar ‘Florina’. Tree Genetics & Genome. 12:56  . DOI: 10.1007/s11295-016-1015-x
  • Perchepied L., Guérif P., Ravon E., Denancé C., Laurens F., Robert P., Bouvier L., Lespinasse Y., Durel C.E. 2016. Polygenic inheritance of resistance to Cacopsylla pyri in a Pyrus communis x P. ussuriensis progeny is explained by three QTLs involving an epistatic interaction. Tree Genetics & Genome. 12: 108. DOI: 10.1007/s11295-016-1072-1
  • Perrin F., Brahem M., Dubois-Laurent C., Huet S., Jourdan M., Geoffriau E., Peltier D., Gagne S 2016. Differential pigment accumulation in carrot leaves and roots during two growing periods.. J. Agric. Food Chem.  64:906-912 . doi: 10.1021/acs.jafc.5b05308
  • Pietzenuk B., C. Markus, H. Gaubert, N. Bagwan, A. Merotto, E. Bucher and A. Pecinka 2016. Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements.. Genome Biology.  17:209.
  • Plissonneau C, Daverdin G, Ollivier B, Blaise F, Degrave A, Fudal I, Rouxel T, Balesdent MH 2016. A game of hide and seek between avirulence genes AvrLm4-7 and AvrLm3 in Leptosphaeria maculans. New Phytologist. 209:1613-1624. DOI: 10.1111/nph.13736
  • Poisson A.S., Berthelot P., Le Bras C., Grapin A., Vergne E., Chevreau E. 2016. A droplet-vitrification protocol enabled cryopreservation of doubled haploid explants of Malus x domestica Borkh. ‘Golden Delicious’. Scientia Horticulturae. 209, 187-191.
  • Proïa F, Pernet A, Thouroude T, Michel G, Clotault J 2016. On the characterization of flowering curves using Gaussian mixture models. Journal of Theoretical Biology. 402 : 75-88.
  • Rezki S, Campion C, Iacomi-Vasilescu B, Préveaux A, Toualbia Y, Bonneau S, Briand M, Laurent E, Hunault G, Simoneau P, Jacques MA, Barret M. 2016. Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms. PeerJ. 4:e1923. DOI 10.7717/peerj.1923
  • Rigaill G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis-Rabusseau C, Soubigou-Taconnat L, Aubourg S, Lurin C, Martin-Magniette ML, Delannoy E 2016. Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis. Brief Bioinform. pii: bbw092. 10.1093/bib/bbw092
  • Robert P., Braud F., Aligon S., Brisset M.N. 2016. DL-b-Aminobutyric acid application negatively affects reproduction and larval development of the rosy apple aphid, Dysaphis plantaginea, on apple. Entomologia Experimentalis er Applicata. 159: 46-53. DOI: 10.1111/eea.12415
  • Roman, H., Girault, T., Barbier, F., Péron, T., Brouard, N., Pencik, A., Novak, O., Vian, A., Sakr, S., Lothier, J., Le Gourrierec, J., Leduc, N. 2016. Cytokinins are initial targets of light in the control of bud outgrowth. Plant Physiol. 1672 : 489-509.
  • Slama I. , Jdey A., Rouached A., Talbi O., Debez A., Ghnaya T., Limami AM., Abdelly C. 2016. Comparative responses to water deficit stress and subsequent recovery in the cultivated beet Beta vulgaris and its wild relative B. macrocarpa. Crop and Pasture Science. 67: 553-562.
  • Special Committee on Registration of Algal and Plant Names (including fossils), Barkworth M.E., Watson M., Barrie F.R., Belyaeva I.V., Chung R.C.K. , Dašková J., Davidse G., Dönmez A.A., Doweld A.B., Dressler S., Flann C., Gandhi K., Geltman D., Glen H.F., Greuter W., Head M.J., Jahn R., Janarthanam M.K., Katinas L., Kirk P.M., Klazenga N., Kusber W.-H. , Kvaček J., Malécot V., Mann D.G., Marhold K., Nagamasu H., Nicolson N., Paton A., Patterson D.J., Price M.J., Prud’homme van Reine W.F., Schneider C.W., Sennikov A., Smith G.F., Stevens P.F., Yang Z.-L., Zhang X.-C., Zuccarello G.C. 2016. Report of the special committee on registration of algal and plant names (including fossils). Taxon. 65(3) : 670-672.
  • Timm Storch T, Finatto T, Bruneau M, Orsel M, Renou JP, Rombaldi CV, Quecini V, Laurens F, Girardi CL. 2016. Contrasting Transcriptional Programs Control Postharvest Development of Apples (Malus x domestica Borkh.) Submitted to Cold Storage and Ethylene Blockage.. Journal of Agricultural and Food Chemistry. August 2017, 65(35). DOI10.1021/acs.jafc.7b01425..
  • Urrestarazu J., Denancé C., Ravon E., Guyader A., Guisnel R., Feugey L., Poncet C., Lateur M., Houben P., Ordidge M., Fernandez-Fernandez F., Evans K.M., Paprstein F., Sedlak J., Nybom H., Garkava-Gustavsson L., Miranda C., Gassmann J., Kellerhals M., Suprun I., Pikunova A.V., Krasova N.G., Torutaeva E., Dondini L., Tartarini S., Laurens F., Durel C.E. 2016. Analysis of the genetic diversity and structure across a wide range of germplasm reveals prominent gene flow in apple at the European level. BMC Plant Biology. 16:30  DOI: 10.1186/s12870-016-0818-0.
  • van de Weg E, Erica Di Pierro, Luca Gianfranceschi, Mario Di Guardo, Herma Kkoehorst-Van Putten, Johannes Kruisselbrink, Sara Longhi, Michela Troggio, Luca Bianco, Hélène Muranty, Giulia Pagliarani, Stefano Tartarini, Thomas Letschka, Lidia Lozano, Larisa Garkava-Gustavsson, Diego Micheletti, Marco Bink, Roeland Voorrips, Ebrahimi Aziz, Riccardo Velasco, and François Laurens  2016. A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species. HortResearch. minor revision.
  • Youssef C., Aubry C., Montrichard F., Beucher D., Juchaux M,. Ben C., Prosperi JM., Teulat B. 2016. Cell length instead cell number becomes the predominant factor contributing to hypocotyl length genotypic differences under abiotic stress in Medicago truncatula. Physiologia Plantarum . 156: 108-124.
  • Zinsmeister J., Lalanne D., Terrasson E., Chatelain E., Vandecasteele C., Ly Vu B., Dubois-Laurent C., Geoffriau E., Signor C.L., Dalmais M., Gutbrod K., Dörmann P., Gallardo K., Bendahmane A., Buitink J., Leprince O.  2016. ABI5 Is a Regulator of Seed Maturation and Longevity in Legumes..  Plant Cell..  28(11):2735-2754. .