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Last update: May 2021

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  • Abadie C, Tcherkez G (2019) Plant sulphur metabolism is stimulated by photorespiration. Communications Biology 2: 379.
  • Akmouche Y, Cheneby J, Lamboeuf M, Elie N, Laperche A, Bertheloot J, D'Hooghe P, Trouverie J, Avice JC, Etienne P, Brunel-Muguet S. 2019. Do nitrogen- and sulphur-remobilization-related parameters measured at the onset of the reproductive stage provide early indicators to adjust N and S fertilization in oilseed rape (Brassica napus L.) grown under N- and/or S-limiting supplies? Planta. doi: 10.1007/s00425-019-03284-2
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  • Boussardon C, Martin-Magniette M-L, Godin B, Benamar A, Vittrant B, Citerne S, Mary-Huard T, Macherel D, Rajjou L, Budar F (2019) Novel cytonuclear combinations modify Arabidopsis thaliana seed physiology and vigor. Frontiers in Plant Science 10: 32.
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  • Colou J., N’guyen G.Q., Dubreu O., Fontaine K., Kwasiborski A., Bastide F., Manero F., Hamon B., Aligon S., Simoneau P., Guillemette T. 2019. Role of Membrane Compartment Occupied by Can1 (MCC) and eisosome subdomains in plant pathogenicity of the necrotrophic fungus Alternaria brassicicola. BMC Microbiology 19 : 295.
  • Daudu, D., …, Gaucher, M., Degrave, A., ..., Brisset, M.-N., ..., Glevarec, G., 2019. Setting-up a fast and reliable cytokinin biosensor based on a plant histidine kinase receptor expressed in Saccharomyces cerevisiae. Journal of Biotechnology 289, 103–111.
  • Debray K, Marie-Magdelaine J, Ruttink T, Clotault J, Foucher F, Malécot V (2019). Identification and assessment of variable single-copy orthologous (SCO) nuclear loci for low-level phylogenomics: a case study in the genus Rosa (Rosaceae). BMC Evolutionary Biology 19: 152.
  • Denancé N, Briand M, Gaborieau R, Gaillard S, Jacques M-A. 2019. Identification of genetic relationships and subspecies signatures in Xylella fastidiosa. BMC Genomics 20:239. DOI: 10.1186/s12864-019-5565-9
  • Desgeorges, T., Liot, S., Lyon, S., Bouviere, J., Kemmel, A., Trignol, A., Rousseau D, & Chazaud, B. (2019). Open-CSAM, a new tool for semi-automated analysis of myofiber cross-sectional area in regenerating adult skeletal muscle. Skeletal muscle, 9(1), 2.
  • Domergue J-B, Abadie C, Limami A, Way D, Tcherkez G (2019) Seed quality and carbon primary metabolism. Plant, Cell and Environment 42: 2776-2788.
  • Douarre, C., Crispim-Junior, C. F., Gelibert, A., Tougne, L., & Rousseau, D. (2019). Novel data augmentation strategies to boost supervised segmentation of plant disease. Computers and Electronics in Agriculture, 165, 104967.
  • Dupas E, Briand M, Jacques M-A, Cesbron S. 2019. Novel tetraplex qPCR assays for simultaneous detection and identification of Xylella fastidiosa subspecies in plant tissues. Frontiers in Plant Science 10:1732. DOI: 10.3389/fpls.2019.01732
  • Dupas E, Legendre B, Olivier V, Poliakoff F, Manceau C, Cunty A. 2019. Comparison of real-time PCR and droplet digital PCR for the detection of Xylella fastidiosa in plants. Journal of Microbiological Methods 86-95. DOI: 10.1016/j.mimet. 2019. 05.010
  • ElMasry G, Mandour N, Wagner M-H, Demilly D, Verdier J, Belin E, Rousseau D (2019) Utilization of computer vision and multispectral imaging techniques for classification of cowpea (Vigna unguiculata) seeds. Plant Methods 15:24
  • ElMasry, G., Mandour, N., Al-Rejaie, S., Belin, E., & Rousseau, D. (2019). Recent applications of multispectral imaging in seed phenotyping and quality monitoring—An overview. Sensors, 19(5), 1090.
  • Falavigna, V. da S., Malabarba, J., Silveira, C.P., Buffon, V., Mariath, J.E. de A., Pasquali, G., Margis-Pinheiro, M., Revers, L.F., 2019. Characterization of the nucellus-specific dehydrin MdoDHN11 demonstrates its involvement in the tolerance to water deficit. Plant Cell Reports 38, 1099–1107.
  • Fanwoua, J., Vercambre G., Buck-Sorlin, G., Dieleman, A., de Visser P., Génard, M., 2019. Supplemental LED lighting affects the dynamics of tomato fruit growth and composition. Scientia Horticulturae, Elsevier, 2019, 256, pp.108571.
  • Ferreira MASV, Bonneau S, Briand M, Cesbron S, Portier P, Darrasse A, Gama MAS, Barbosa MAG, Mariano RdLR, Souza EB and Jacques M-A. 2019. Xanthomonas citri pv. viticola affecting grapevine in Brazil: emergence of a successful monomorphic pathogen. Frontiers in Plant Science 10:489. DOI: 10.3389/fpls. 2019. 00489
  • Gallardo K, Besson A, Klein A, Le Signor C, Aubert G, Henriet C, Térézol M, Pateyron S, Sanchez M, Trouverie J, Avice JC, Larmure A, Salon C, Balzergue S, Burstin J. Transcriptional Reprogramming of Pea Leaves at Early Reproductive Stages. Frontiers in Plant Science (2019) 7;10:1014.
  • Gerlin L, Cottret L, Cesbron S, Taghouti G, Jacques M-A, Genin S, Baroukh C. 2020. Genome-scale investigation of the metabolic determinants generating bacterial fastidious growth. mSystems 5:e00698-19. DOI: 10.1128/mSystems.00698-19
  • Gillard, N., Belin, É., & Chapeau-Blondeau, F. (2019). Stochastic resonance with unital quantum noise. Fluctuation and Noise Letters, 18(03), 1950015.
  • Gonçalves R. M, Balbi-Peña M. I, Soman J. M, Maringoni A. C, Taghouti G, Fischer-Le Saux M, Portier P. 2019. Genetic diversity of Curtobacterium flaccumfaciens revealed by multilocus sequence analysis. European Journal of Plant Pathology 154:189-202. DOI: 10.1007/s10658-018-01648-0
  • Gossmann TI., Shanmugasundram A., Borno S., Duvaux L., Lemaire C. 2019. Ice-Age Climate Adaptations Trap the Alpine Marmot in a State of Low Genetic Diversity. Current Biology 29 : 1712-1720.
  • Gully K, Celton J-M, Degrave A, Pelletier S, Brisset M-N, Bucher E (2019) Biotic stress-induced priming and de-priming of transcriptional memory in Arabidopsis and Apple. Epigenomes. 3(1): 3.
  • Gully K, Pelletier S, Guillou MC, Ferrand M, Aligon S, Pokotylo I, Perrin A, Vergne E, Fagard M, Ruelland E, Grappin P, Bucher E, Renou JP, Aubourg S. (2019) The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana. Journal of Experimental Botany20;70(4):1349-1365.
  • Hamama L, Voisine L, Pierre S, Cesbron D, Ogé L, Lecerf M, Cailleux S, Bosselut J, Foucrier S, Foucher F, Berruyer R, Sakr S, Hibrand-Saint Oyant L (2019). Improvement of in vitro donor plant competence to increase de novo shoot organogenesis in rose genotypes. Scientia Horticulturae 252: 85-95.
  • Hamama, L. Voisine L, Pierre S., Cesbron D, Ogé L, Lecerf M, Cailleux S, Bosselut J, Foucrier S, Foucher F, Berruyer R, Sakr S, Hibrand-Saint Oyant S. 2019. Improvement of in vitro donor plant competence to increase de novo shoot organogenesis in rose genotypes. Scientia Horticulturae 252:85-95
  • Havird JC, Noe GR, Link L, Torres A, Logan DC, Sloan DB, Chicco AJ (2019) Do angiosperms with highly divergent mitochondrial genomes have altered mitochondrial function? Mitochondrion 49: 1-11.
  • Hibrand-Saint Oyant L, Roccia A, Cavel E, Caissard J-C, Machenaud J, Thouroude T, Jeauffre J, Bony A, Dubois A, Vergne P, J. Szécsi, F. Foucher, M. Bendahmane and S. Baudino. 2019. Biosynthesis of 2-Phenylethanol in Rose Petals Is Linked to the Expression of One Allele of RhPAAS. Plant Physiology 179: 1064-1079.
  • Kerdraon L, Balesdent MH, Barret M, Laval V, Suffert F. 2019. Crop residues in wheat-oilseed rape rotation system: a pivotal, shifting platform for microbial meetings. Microbial Ecology 77:931-945. DOI: 10.1007/s00248-019-01340-8
  • Kerdraon L, Barret M, Laval V, Suffert F. 2019. Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat. Microbiome.7:125. DOI: 10.1186/s40168-019-0736-0
  • Khenfous-Djebari B, Kerkoud M, Fischer-Le Saux M, Benhassine T, Bouznad Z, Koebnik R, Bragard C 2019. Isolation of atypical wheat-associated xanthomonads in Algeria. Phytopathologia Mediterranea 58: 497-506 . DOI:10.14601/Phyto-10855
  • Le Cam B, Sargent D, Gouzy J, Amselem J, Bellanger MN, Bouchez O, Brown S, Caffier V, De Gracia M, Debuchy R, Duvaux L, Payen T, Sannier M, Shiller J, Collemare J, Lemaire C. 2019. Population genome sequencing of the scab fungal, species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata. G3 9: 2405-2414
  • Le Clerc V., Aubert C., Cottet V., Yovanopoulos C., Piquet M., Suel A., Huet S., Koutouan C., Hamama L., Chalot G., Jost M., Pumo B., Briard M. (2019). Breeding for carrot resistance to Alternaria dauci without compromising taste. Molecular breeding 39:59
  • Le Mire, G., Siah, A., Marolleau, B., Gaucher, M., Maumené, C., Brostaux, Y., Massart, S., Brisset, M.-N., Jijakli, M.H., 2019. Evaluation of λ-carrageenan, CpG-ODN, glycine betaine, Spirulina platensis and ergosterol as elicitors for the control of Zymoseptoria tritici in wheat. Phytopathology 109, 409–417.
  • Le Moullec-Rieu T, C. Chateau, C. Pascouau, F. Bastide, B. Hamon, P. Poupard, E. Laurent, J. Gombert, E. Morel, I. Sérandat, P.L. Guillermin, P.E. Brandeis, S. Mallard. 2019. First Report of Root and Collar Rot Caused by Fusarium tricinctum and Fusarium avenaceum on Carrot in France. Plant Disease 104(2) : 591.
  • Linsmith G, Rombauts S, Montanari S, Deng CH, Celton JM, Guérif P, Liu C, Lohaus R,  Zurn JD, Cestaro A, Bassil NV, Bakker LV, Schijlen E, Gardiner SE,…  Bianco L. “Pseudo-Chromosome Length Genome Assembly of a Double Haploid ‘Bartlett’ Pear (Pyrus Communis L.).” GigaScience, 8 ; giz138.
  • Lonardi S, Muñoz‐Amatriaín M, Liang Q, Shu S, Wanamaker SI, Lo S, Tanskanen J, Schulman AH, Zhu T, Luo M, Alhakami H, Ounit R, Hasan A, Verdier J, Roberts PA, Santos JRP, Ndeve A, Doležel J, Vrána J, Hokin SA, Farmer AD, Cannon SB, Close TJ (2019) The genome of cowpea (Vigna unguiculata L. Walp). Plant Journal 98: 767-782.
  • Martinez Flores F., Crespo M. B., Geoffriau E., Allender C., Ruess H., Arbizu C., Simon P., Spooner D.M. (2019). Extended studies of interspecific relationships in Daucus (Apiaceae) using DNA sequences from ten nuclear Orthologues. Botanical Journal of the Linnean Society 191: 164–187
  • McClure KA, Gong Y, Song J, Vinqvist-Tymchuk M, Campbell Palmer L, Fan L, Burgher-MacLellan K, Zhang Z, Celton JM, Forney CF, Migicovsky, Myles S. The genetic architecture of apple polyphenols. Horticulture Research (2019) 6;107.
  • Meline V, Delage W, Brin C, Li-Marchetti C, Sochard D, Arlat M, Rousseau C, Darrasse A, Briand M, Lebreton G, Portier P, Fischer-Le Saux M, Durand K, Jacques M-A, Belin E, Boureau T. 2019. Role of the acquisition of a Type 3 Secretion System in the emergence of novel pathogenic strains of Xanthomonas. Molecular Plant Pathology 20:33-50. DOI:10.1111/mpp.12737
  • Muranty H., Denancé C., Feugey L., Crépin J.L., Barbier Y., Tartarini S., Ordidge M., Troggio M., Lateur M., Nybom H., Paprstein F., Laurens F., Durel C.-E.., 2019. Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm. BMC Plant Biol. 2020 Jan 2;20(1):2. doi: 10.1186/s12870-019-2171-6.
  • N’guyen G.Q., Raulo R., Marchi M., Agustí-Brisach C., Iacomi B., Pelletier S., Renou J.-P., Bataillé-Simoneau N., Campion C., Bastide F., Hamon B., …Lemoine R., Kwasiborski A., Simoneau P., Guillemette T. 2019. Responses to Hydric Stress in the Seed-Borne Necrotrophic Fungus Alternaria brassicicola. Frontiers in Microbiology 10 : 1-16.
  • Nogue F, Vergne P, Chevre AM, Chauvin JE, Bouchabke-Coussa O, Dejardin A, Chevreau E, Hibrand-Saint Oyant L, Mazier M, Barret P, Guiderdoni E, Sallaud C, Foucrier S, Devaux P, Rogowsky PM (2019). Crop plants with improved culture and quality traits for food, feed and other uses. Transgenic Research 28: 65-73.
  • Nogué, F., Vergne, P., Chèvre, A.-M., Chauvin, J.-E., Bouchabké-Coussa, O., Déjardin, A., Chevreau, E., Hibrand-Saint Oyant, L., Mazier, M., Barret, P., Guiderdoni, E., Sallaud, C., Foucrier, S., Devaux, P., Rogowsky, P.M., 2019. Crop plants with improved culture and quality traits for food, feed and other uses. Transgenic Research 28, 65–73.
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  • Peace CP, Bianco L, Troggio M, van de Weg E, Howard NP, Cornille A, Durel CE, Myles S, Migicovsky Z, Schaffer RJ, Costes E, Fazio G, Yamane H, …. , Bucher E, …., Vanderzande S. (2019) Apple whole genome sequences: recent advances and new prospects. Horticulture Research 5;6:59.
  • Pédron J, Bertrand C, Taghouti G, Portier P, Barny M-A. 2019. Pectobacterium aquaticum sp. nov, isolated from waterways International Journal of Systematic and Evolutionary Microbiology 69:745–751. DOI: 10.1099/ijsem.0.003229
  • Pelletier S, Gully K, Guillou M-C, Ferrand M, Aligon S, Pokotylo I, Perrin A, Vergne E, Fagard M, Ruelland E, Grappin P, Bucher E, Renou J-P, Aubourg S (2019) The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana. Journal of Exp. Botany. 4: 1349-1365.
  • Petit-Houdenot, Y., Degrave, A., Meyer, M., Blaise, F., Ollivier, B., Marais, C.-L., Jauneau, A., Audran, C., Rivas, S., Veneault-Fourrey, C., Brun, H.H., Rouxel, T., Fudal, I., Balesdent, M.-H., 2019. A two genes – for – one gene interaction between Leptosphaeria maculans and Brassica napus. New Phytologist 223, 397–411.
  • Philippe F, Verdu I, Morère-Le Paven M-C, Limami AM, Planchet E (2019) Involvement of Medicago truncatula glutamate receptor-like channels in nitric oxide production under short-term water deficit stress. Journal of Plant Physiology 236: 1-6.
  • Portier P, Pédron J, Taghouti G, Fischer-Le Saux M, Caullireau E, Bertrand C, Laurent A, Chawki K, Oulgazi S, Moumni M, Andrivon D, Dutrieux C, Faure D, Hélias V, Barny M-A. 2019. Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov, proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov, emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov, isolated from streams and symptoms on diverse plants. International Journal of Systematic and Evolutionary Microbiology 69:3214–3223. DOI: 10.1099/ijsem.0.003611
  • Proïa F, Panloup F, Trabelsi C, Clotault J (2019). Probabilistic reconstruction of genealogies for polyploid plant species. Journal of Theoretical Biology 462:537-551.
  • Rasti, P., Ahmad, A., Samiei, S., Belin, E., & Rousseau, D. (2019). Supervised image classification by scattering transform with application to weed detection in culture crops of high density. Remote Sensing, 11(3), 249.
  • Rasti, P., Wolf, C., Dorez, H., Sablong, R., Moussata, D., Samiei, S., & Rousseau, D. (2019). Machine Learning-Based Classification of the Health State of Mice Colon in Cancer Study from Confocal Laser Endomicroscopy. Scientific Reports, 9(1), 1-11.
  • Réthoré E, d'Andrea S, Benamar A, Cukier C, Tolleter D, Limami AM, Avelange-Macherel M-H, Macherel D (2019) Arabidopsis seedlings display a remarkable resilience under severe mineral starvation using their metabolic plasticity to remain self-sufficient for weeks. The Plant Journal 99: 302-315.
  • Rilley B, de Larrard F, Malécot V, Dubois-Brugger I, Lequay H, Lecomte G (2019). Living concrete: Democratizing living walls. Science of the Total Environnement 673: 281-295.
  • Rochefort R, Briand M, Marais C, Wagner MH, Laperche A, Vallee P, Barret M, Sarniguet A. 2019. Influence of environment and host plant genotype on the structure and diversity of the Brassica napus seed microbiota. Phytobiomes 3:326-33 DOI: 10.1094/PBIOMES-06-19-0031-R
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  • Sdika, M., Alston, L., Rousseau, D., Guyotat, J., Mahieu-Williame, L., & Montcel, B. (2019). Repetitive motion compensation for real time intraoperative video processing. Medical image analysis, 53, 1-10.
  • Smulders, M. J. M., Arens, Bourke, Debener, T., Linde, Riek, J. D., Leus, Ruttink, Baudino, S., Hibrand-Saint Oyant, L., Clotault, J., Foucher, F. (2019). In the name of the rose: a roadmap for rose research in the genome era. Horticulture Research, 6(65).
  • Tcherkez G, Limami AM (2019) Net photosynthetic CO2 assimilation: more than just CO2 and O2 reduction cycles. New Phytologist 223: 520-529.
  • Timilsina S, Kara S, Jacques M-A, Potnis N, Minsavage GV, Vallad GE, Jones JB, Fischer-Le Saux M. 2019. Reclassification of Xanthomonas gardneri (ex Šutic 1957) Jones et al. 2006 as a later heterotypic synonym of Xanthomonas cynarae Trebaol et al. 2000 and description of X. cynarae pv. cynarae and X. cynarae pv. gardneri based on whole genome analyses. International Journal of Systematic and Evolutionary Microbiology 69:343–349. DOI: 10.1099/ijsem.0.003104
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  • Vanbergen A, Potts S, Vian A, Malkemper E, Young J, Tscheulin T. 2019. Risk to pollinators from anthropogenic electro-magnetic radiation (EMR): Evidence and knowledge gaps. Science of the Total Environment. 695:133833
  • Vega-Mas I, Cukier C, Coleto I, Gonzalez-Murua C, Limami AM, Gonzalez-Moro MB, Marino D (2019) Isotopic labelling reveals the efficient adaptation of wheat root TCA cycle flux modes to match carbon demand under ammonium nutrition. Scientific Reports 9: 8925.
  • Wang M, Le Moigne M-A, Bertheloot J, Crespel L, Perez-Garcia M-D, Ogé L, Demotes-Mainard S, Hamama L, Davière J-M and Sakr S (2019) BRANCHED1: A Key Hub of Shoot Branching. Front. Plant Sci. 10:76. doi: 10.3389/fpls.2019.00076
  • Wang M, Ogé L, Voisine L, Perez-Garcia MD, Jeauffre J, Hibrand Saint-Oyant L, Grappin P, Hamama L, Sakr S. 2019. Posttranscriptional Regulation of RhBRC1 (Rosa hybrida BRANCHED1) in Response to Sugars is Mediated via its Own 30 Untranslated Region, with a Potential Role of RhPUF4 (Pumilio RNA-Binding Protein Family). International Journal of Molecular Sciences 20:3808. doi:10.3390/ijms20153808
  • Zhang P, Fan Y, Sun X, Chen L, Terzaghi W, Bucher E, Li L, Dai M. A large-scale circular RNA profiling reveals universal molecular mechanisms responsive to drought stress in maize and Arabidopsis. Plant Journal (2019) 98(4):697-713.