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  • Abadie C., Lalande J., Tcherkez G. (2022) Exact mass GC-MS analysis: Protocol, database, advantages and application to plant metabolic profiling. Plant Cell & Environment 10.1111/pce.14407
  • Ahmad, A., Rousseau, D. et al. (2022) On the robustness of machine learning algorithms toward microfluidic distortions for cell classification via on-chip fluorescence microscopy. Lab on a Chip 22(18), 3453-3463
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  • Boeglin L., Morère Le-Paven M.C., Clochard T., Fustec J., Limami A.M. (2022) Pisum sativum response to nitrate as affeted by Rhizobium leguminosarum-derived signals. Plants 11(15): 1966 10.3390/plants11151966
  • Bouhlel, N., & Rousseau, D. (2022) A Generic Formula and Some Special Cases for the Kullback–Leibler Divergence between Central Multivariate Cauchy Distributions. Entropy 24(6), 838
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  • Bréard D., Thibault Barrit, Daniel Sochard, Sophie Aligon, Elisabeth Planchet, Béatrice Teulat, Josiane Le Corff, Claire Campion, David Guilet (2022) Development of a quantification method for routine analysis of glucosinolates and camalexin in brassicaceous small-sized samples by simultaneous extraction prior to liquid chromatography determination. Journal of chromatography B 1205 : 123348
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  • Caffier V, Shiller J, Bellanger MN, Collemare J, Expert P, Gladieux P, Pascouau P, Sannier M, Le Cam B. (2022) 2022 Hybridizations Between formae speciales of Venturia inaequalis Pave the Way for a New Biocontrol Strategy to Manage Fungal Plant Pathogens. Phytopathology 112 (7) , pp.1401-1405,
  • Cazenave X, Petit B, Lateur M, Nybom H, Sedlak J, Tartarini S, Laurens F, Durel CE, Muranty H (2022) Combining genetic resources and elite material populations to improve the accuracy of genomic prediction in apple. G3 Genes|Genomes|Genetics, Volume 12, Issue 3, March 2022, jkab420,
  • Cesbron S , Dupas E , and Jacques M-A (2022) Evaluation of the AmplifyRP® XRT+ kit for the detection of Xylella fastidiosa by Recombinase Polymerase Amplification (RPA). PhytoFrontiers
  • Chavonet, E., Gaucher, M., Warneys, R., Bodelot, A., Heintz, C., Juillard, A., Bowen, J. K., Hamiaux, C., Brisset, M.N., Degrave, A. (2022) Search for host defense markers uncovers an apple agglutination factor corresponding with fire blight resistance. Plant Physiology 188: 1350-1368
  • Chesneau G, Laroche B, Préveaux A, Marais C, Briand M, Marolleau B, Simonin M, Barret M (2022) Single Seed Microbiota: Assembly and Transmission from Parent Plant to Seedling. mBio
  • Chevalier, W., Moussa, S. A., Ottoni, M. M. N., Dubois-Laurent, C., Huet, S., Aubert, C., Desnoues, E., Navez,B., Cottet,V., Chalot,G., Jost,M., Barrot,L., Freymark,G., Uittenbogaard,M., Chaniet,F., Gauffreteau,A., Suel,A., Bouvier Merlet,M.H., Hamama,L., Le Clerc,V., Briard,M., Peltier,D., Geoffriau, E. (2022) Evaluation of pedoclimatic factors and cultural practices effects on carotenoid and sugar content in carrot root. European Journal of Agronomy 140, 126577
  • Corentin CONART, Nathanaelle SACLIER, Fabrice FOUCHER, Aurélie RIUS BONY, Saretta N. PARAMITA, Sandrine MOJA, Tatiana THOUROUDE, Christophe DOUAD, Pulu SUN, Baptiste NAYRAUD, Denis SAINT-MARCOUX, Clément GOUBERT, Muriel BAHUT, Julien JEAUFFRE, Laurence HIBRAND SAINT-OYANT, Robert C. SCHUURINK5, Jean-Louis MAGNARD, Benoît BOACHON, Natalia DUDAREVA, Sylvie BAUDINO, Jean-Claude CAISSARD (2022) Duplication and Specialization of NUDX1 in Rosaceae Led to Geraniol Production in Rose Petals. Molecular Biology and Evolution 39,2
  • Coupel-Ledru A., Pallas B., Delalande M., Segura V., Guitton B., Muranty H., Durel C.E., Regnard J.L., Costes E. (2022) Tree architecture, light interception and water use related traits are controlled by different genomic regions in an apple tree core collection. New Phytologist 234:209-226
  • Courtial J., Jean-Jacques Helesbeux, Hugo Oudart, Sophie Aligon, Muriel Bahut,Bruno Hamon, Guillaume N’Guyen, Sandrine Pigné, Ahmed G. Hussain, Claire Pascouau, Nelly Bataillé-Simoneau, Jérôme Collemare, Romain Berruyer, Pascal Poupard. (2022) "Characterization of NRPS and PKS genes involved in the biosynthesis of SMs in the phytopathogenic fungus Alternaria dauci, including the phytotoxic polyketide aldaulactone". Scientific Reports 12: 8155
  • Crespel L, Le Bras C, Amoroso T, Dubuc B, Citerne S, Perez-Garcia MD, Sakr S (2022) Involvement of sugar and abscisic acid in the genotype-specific response of rose to far-red light. Frontiers in Plant Science
  • Debray K, Le Paslier MC, Bérard A, Thouroude T, Michel G, Marie-Magdelaine J, Bruneau A, Foucher F, Malécot V (2022) Unveiling the Patterns of Reticulated Evolutionary Processes with Phylogenomics: Hybridization and Polyploidy in the Genus Rosa. Systematic Biology 71 (3): 547-569
  • Debucquet G, Maignant A, Laroche AL, Widehen C, Morel P (2022) Bringing nature in private housing: Environmental, social and food connections for urban resilience. Cities 131
  • Domergue J.B., Abadie C., Lalande J., Deswarte J.C., Ober E., Laurent V., Zimmerli C., Lerebour P., Duchalais L., Bédard C., Derory J., Moittie T., Lamothe-Sibold M., Beauchêne K., Limami A.M., Tcherkez G. (2022) Grain carbon isotope composition is a marker for allocation and harvest index in wheat. Plant Cell & Environment 45: 2145–2157 10.1111/pce.14339
  • Domergue J.B., Lalande J., Abadie C., Tcherkez G. (2022) Compound-specific 14N/15N analysis of amino acid trimyethylsylated derivatives from plant seed proteins. International Journal of Molecular Sciences 23(9): 4893 10.3390/ijms23094893
  • Domergue J.B., Lalande J., Beucher D., Satour P., Abadie C., Limami A.M., Tcherkez G. (2022) Experimental evidence for seed metabolic allometry in barrel medic (Medicago truncatula Gaertn.). International Journal of Molecular Sciences 23(15): 8484 10.3390/ijms23158484
  • Eid, R., Landes, C., Pernet, A., Benoit, E., Santagostini, P., El Ghaziri, A., and Bourbeillon, J. (2022) DIVIS: a semantic Distance to improve the VISualisation of heterogeneous phenotypic datasets. BioData Mining 15
  • Fan Y., Asao S., Furbank R.T., von Caemmerer S., Day D.A., Tcherkez G., Sage T.L., Sage R.F., Atkin O.K. (2022) The crucial roles of mitochondria in supporting C4 photosynthesis. New Phytologist 233(3): 1083-1096 10.1111/nph.17818
  • Foucher J., Ruh M., Briand M., Préveaux A., Barbazange F., Boureau T., Jacques M-A., Chen NWG. (2022) Improving common bacterial blight phenotyping by using rub-inoculation and machine learning: cheaper, better, faster, stronger. American Phytopathological Society 112:691-699 P
  • Fouet M.P.A., Singer D., Coynel A., Héliot S., Howa H., Lalande J., Mouret A., Schweizer M., Tcherkez G., Jorissen F.J. (2022) Foraminiferal distribution in two estuarine intertidal mudflats of the french atlantic coast: Testing the marine influence index. Water 14(4): 645 10.3390/w14040645
  • Ghaleb W., Barre P., Teulat B., Ahmed L., Escobar-Gutiérrez A.J. (2022) Divergent selection for seed ability to germinate at extreme temperatures in perennial ryegrass (Lolium perenne L.). Frontiers in Plant Science 12: 794488 10.3389/fpls.2021.794488
  • Gaucher M, Righetti L, Aubourg S, Dugé de Bernonville T, Brisset MN , Chevreau E, Vergne E (2022) An Erwinia amylovora inducible promoter for improvement of apple fire blight resistance. Plant Cell Reports 41:1499-1513
  • Gaucher M, Heintz C, Cournol R, Juillard A, Bellevaux C, Cavaignac S, Coureaud C, Giraud M, Le Maguet J, Bérud M, Koké E, Crété X, Lemarquand A, Orain G, Brisset MN (2022) The use of potassium phosphonate (KHP) for the control of three major apple pests. Plant Disease 106:3166-3177
  • Goldstein C, Boucaud J, Malécot V (2022) Dispositions discrètes : transferts entre botanique et cristallographie dans les travaux d’Auguste Bravais HAL Id: hal-03762322
  • Gong X.Y., Ma W.T., Yu Y.Z., Fang K., Yang Y., Tcherkez G., Adams M.A. (2022) Overestimated gains in water-use efficiency by global forests. Global Change Biology  28(16): 4923-4934 10.1111/gcb.16221
  • Guillou MC, Vergne E, Aligon S, Pelletier S, Simonneau F, Rolland A, Chabout S, Mouille G, Kay Gully, Grappin P, Montrichard F, Aubourg S, Renou JP. (2022) SCOOP12 peptide acts on ROS homeostasis to modulate cell division and elongation in Arabidopsis primary root. Journal of Experimental Botany 73(18):6115-6132
  • Guillou MC, Balliau T, Vergne E, Canut H, Chourré J, Herrera-León C, Ramos-Martín F, Ahmadi-Afzadi M, D’Amelio N, Ruelland E, Zivy M, Renou JP, Jamet E, Aubourg S (2022) The PROSCOOP10 gene encodes two extracellular hydroxylated peptides and impacts flowering time in Arabidopsis. Plants 11(24):3554 doi: 10.3390/plants11243554
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  • Holloway-Phillips M., Baan J., Nelson D.B., Lehmann M.M., Tcherkez G., Kahmen A. (2022) Species variation in the hydrogen isotope composition of leaf cellulose is mostly driven by isotopic variation in leaf sucrose. Plant Cell & Environment 45(9): 2636-2651 10.1111/pce.14362
  • Jardinaud MF, Fromentin J, Auriac MC, Moreau S, Pecrix Y, Taconnat-Soubigou L, Cottret L, Aubert G, Balzergue S, Burstin J, Carrere S and Gamas P (2022) MtEFD and MtEFD2, two transcription factors with distinct neofonctionalization in symbiotic nodule development. Plant Physiology 2022 Apr 26 PMID: 35471237 DOI: 10.1093/plphys/kiac177 
  • Jiang Z, Chen Q, Chen L, Liu D, Yang H, Xu C, Hong J, Li J, Ding Y, Sakr S, Liu Z, Jiang Y and Li G (2022) Sink Strength Promoting Remobilization of Non-Structural Carbohydrates by Activating Sugar Signaling in Rice Stem during Grain Filling.  Int. J. Mol.Sci. 23(9), 4864
  • Jiang Z., M. Wang, M. Nicolas, L. Ogé, M.D. Pérez-Garcia, L. Crespel, G. Li, Y. Ding, J. Le Gourrierec, P. Grappin, and S. Sakr (2022) Glucose-6-Phosphate dehydrogenases: the hidden players of plant physiology. I.J.M.S. 23(24), 16128.
  • Jung M., Keller B., Roth M., Aranzana M., Auwerkerken A., Guerra W., Al-Rifaï M., Lewandowski M., Sanin N., Rymenants M., Didelot F., Dujak C., Font i Forcada C., Knauf A., Laurens F., Studer B., Muranty H., Patocchi A. (2022) Genetic architecture and genomic predictive ability of apple quantitative traits across environments. Horticulture Research 9: uhac028
  • Koji Kawamura, Yoshihiro Ueda, Shogo Matsumoto, Takanori Horibe, Shungo Otagaki, LiWang, Guoliang Wang, Laurence Hibrand-Saint Oyant,Fabrice Foucher, Marcus Linde and Thomas Debener (2022) The identification of the Rosa S-locus provides new insights into the breeding and wild origins of continuous-flowering roses. Horticultural Research
  • Kwasiborski A., Bastide F., Hamon B., Poupard P., Simoneau P., Guillemette T. (2022) In silico analysis of RNA interference components and miRNAs-like RNAs in the seed-borne necrotrophic fungus Alternaria brassicicola. Fungal Biology 126:224-234
  • Laïlle P., Vajou B., Béziau N., Meyer- Grandbastien A., Fromage B., Galopin G (2022) Experience of nature while walking in an urban park: joint approaches in psychology and landscape science. Acta Horticulturae, https://10.17660/ActaHortic.2022.1356.50
  • Larrieu A, Brunoud G, Guérault A, Lainé S, Hennet L, Stigliani A, Gildea I, Just J, Soubigou-Taconnat L, Balzergue S, Davies B, Scarpella E, Helariutta Y, Parcy F, Vernoux T (2022) Transcriptional Reprogramming during Floral Fate Acquisition. ISCIENCE 2022 Jun 27;25(7):104683
  • Limami AM., Hirel B., Lothier J. (2022) Does Potassium (K+) Contribute to High-Nitrate (NO3−) Weakening of a Plant’s Defense System against Necrotrophic Fungi ? Int. J. Mol. Sci. 23(24): 15631 10.3390/ijms232415631
  • Mafakheri H, Taghavi SM., Zarei S., Rahimi T., Hasannezhad MS, Portier P., Fischer-Le Saux M., Dimkić I., Koebnik R., Kuzmanović N., Osdaghi E. (2022) Phenotypic and Molecular-Phylogenetic Analyses Reveal Distinct Features of Crown Gall-Associated Xanthomonas Strains. Microbiology Spectrum 10 (1) : e00577-21
  • Mafakheri H.; Taghavi S.M.; Zarei S.; Portier P.; Dimkić I.; Koebnik R.; Kuzmanović N.; Osdaghi E. (2022) Xanthomonas bonasiae sp. nov. and Xanthomonas youngii sp. nov. isolated from crown gall tissues. IJSEM Vol. 72 Issue 6
  • Maillot G, Szadkowski E, Massire A, Brunaud V, Rigaill G, Caromel B, Chadoeuf J, Bachellez A, Touhami N, Hein I, Lamour K, Balzergue S, Lefebvre V (2022) Strive or thrive: trends in Phytophthora capsici gene expression in partially resistant pepper. Frontiers in plant science Nov 2022; Manuscript ID: 980587 doi: 10.3389
  • Malabarba J, Chen Z, Windels D, Verdier J (2022) Chromatin Immunoprecipitation dataset of H3ac and H3K27me3 histone marks followed by DNA sequencing of Medicago truncatula embryos during control and heat stress conditions to decipher epigenetic regulation of desiccation tolerance acquisition. Data in Brief 40: 2022, 107793,
  • Malécange M., Pérez-Garcia M.D., Citerne S., Sergheraert R., Lalande J., Teulat B., Mounier E., Sakr S., Lothier J. (2022) Leafamine ®, a free amino acid-rich biostimulant, promotes growth performance of deficit-irrigated lettuce. International Journal of Molecular Sciences 23(13): 7338
  • Mallet, Laufs P, Leduc N and Le Gourrierec J (2022) Photocontrol of Axillary Bud Outgrowth by MicroRNAs: Current State-of-the-Art and Novel Perspectives Gained From the Rosebush Model. Front Plant Sci,
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  • Mofini MT, Diedhiou AG, Simonin M, Tchouomo D, Pignoly S, Ndiaye C, Min D , Vigouroux Y, Laplaze L, Kane A. (2022) Cultivated and Wild Pearl Millet Display Contrasting Patterns of Abundance and Co-occurrence in their root mycobiome.  Scientific Reports 12, 1639
  • Mohammad-Razdari, A., Rousseau, D., Bakhshipour, A., Taylor, S., Poveda, J., & Kiani, H. (2022) Recent advances in E-monitoring of plant diseases. Biosensors and Bioelectronics
  • Ortega-Cuadros Mailen, Laurine Chir, Sophie Aligon, Tatiana Arias, Jerome Verdier, Philippe Grappin (2022) Dual-transcriptomic datasets evaluating the effect of the necrotrophic fungus Alternaria brassicicola on Arabidopsis germinating seeds. Data in Brief Volume 44,108530
  • Ortega-Cuadros Mailen, Tiago Lodi De Souza, Romain Berruyer, Sophie Aligon, Sandra Pelletier, Jean-Pierre Renou, Tatiana Arias, Claire Campion, Thomas Guillemette, Jérome Verdier and Philippe Grappin (2022) Seed Transmission of Pathogens: Non-Canonical ImmuneResponse in Arabidopsis Germinating Seeds Compared to Early Seedlings against the Necrotrophic FungusAlternaria brassicicola. Plants 11 (13) ; 1708
  • Osdaghi E, Taghouti G, Dutrieux C, Taghavi SM, Fazliarab A, Briand M, Fischer-Le Saux M, Portier P, Jacques MA. (2022) Whole Genome Resources of 17 Curtobacterium flaccumfaciens Strains Including Pathotypes of C. flaccumfaciens pv. betae, C. flaccumfaciens pv. oortii and C. flaccumfaciens pv. poinsettiae. Mol Plant Microbe Interact. 35 (4), 352-356 doi: 10.1094/MPMI-11-21-0282-A
  • Osei-Kwarteng, M., Ayipio, E., Moualeu-Ngangue, D., Buck-Sorlin, G., & Stützel, H. (2022) Interspecific variation in leaf traits, photosynthetic light response, and whole-plant productivity in amaranths (Amaranthus spp. L.). PloS one 17(6), e0270674
  • Paillat, L., Cannavo, P., Dourdan, A., Barraud, F., Guénon, R., & Huché-Thélier, (2022) N and P use efficiencies of basil cultivated in organically fertilized growing media.  Scientia Horticulturae 303, 111208
  • Pascouau C., C. Chateau, F. Bastide, T. Le Moullec-Rieu, T. Guillemette, B. Hamon, S. ALigon, A. Cailleau, D. Sochard, J. Gombert, E. Morel, E. Laurent, I. Sérandat, R. Berruyer, P. Poupard (2022) Characterization and pathogenicity of Fusarium spp. isolates causing root and collar rot on carrot. Canadian Journal of Plant Pathology 45 (1), 76-91. DOI: 10.1080/07060661.2022.2103737
  • Pédron J., van der Wolf J. M. , Portier P. , Caullireau E. and Van Gijsegem F. (2022) The Broad Host Range Plant Pathogen Dickeya dianthicola Shows a High Genetic Diversity. Microorganisms Vol. 10 Issue 5 Pages 1024 doi:10.3390/microorganisms10051024
  • Pophof B, Henschenmacher B, Kattnig DR, Kuhne J, Vian A, Ziegelberger G (2022) biological effects of electric, magnetic, and electromagnetic fields from 0 to 100 MHz on fauna and flora. Workshop report. Health Physics 124(1):39-52. doi: 10.1097/HP.0000000000001624 
  • Pophof B, Henschenmacher B, Kattnig DR, Kuhne J, Vian A, Ziegelberger G (2022) biological effects of electric, magnetic, and electromagnetic fields above 100 MHz on fauna and flora. Workshop report. Health Physics 124(1):31-38. doi: 10.1097/HP.0000000000001625
  • Porcher A, Guérin V, Macherel D, Lebrec A, Satour P, Lothier J, Vian A (2022) High expression of Alternative Oxydase 2 in latent axillary buds suggestes its key role in quiescence maintenance in rosebush. Plant Cell Physiol 64(2):165-175. doi: 10.1093/pcp/pcac153
  • Portier P., Taghouti G., Bertrand P.E., Briand M., Dutrieux C., Lathus A., Fischer-Le Saux M. (2022) Analysis of the Diversity of Xylophilus ampelinus Strains Held in CIRM-CFBP Reveals a Strongly Homogenous Species. Microorganisms Vol. 10 Issue 8 Pages 1531
  • Ramaroson, M. L., Koutouan, C., Helesbeux, J. J., Le Clerc, V., Hamama, L., Geoffriau, E., Briard, M. (2022) Role of Phenylpropanoids and Flavonoids in Plant Resistance to Pests and Diseases. Molecules 27(23), 8371.
  • Rocca, J. D., Yammine, A., Simonin, M., & Gibert, J. P. (2022) Protist Predation Influences the Temperature Response of Bacterial Communities. Frontiers in microbiology 13: 847964. doi: 10.3389/fmicb.2022.847964 
  • Saied, S., Grenier, P., Geoffriau, E., Polling, B., Kezeya, B., Rejeb, H. (2022) Analysis of actors' visions of Tunisian urban and peri-urban agriculture in order to propose a training program. Analyse des visions de l’agriculture urbaine et péri-urbaine tunisienne en vue de proposer un programme de formation. Cahiers Agricultures , 31, 20.
  • Sano N, Lounifi I, Cueff G, Collet B, Clément G, Balzergue S, Huguet S, Valot B, Galland M and Rajjou L (2022) Multi-Omics Approaches Unravel Specific Features of Embryo and Endosperm in Rice Seed Germination. Frontiers in plant science May 2022, volume 13 doi: 10.3389/fpls.2022.867263
  • Sapoukhina N, Boureau T and Rousseau D (2022) Plant disease symptom segmentation in chlorophyll fluorescence imaging with a synthetic dataset. Front. Plant Sci. 13:969205
  • Simonin, M., Briand, M., Chesneau, G., Rochefort, A., Marais, C., Sarniguet, A., & Barret, M. (2022) Seed microbiota revealed by a large-scale meta-analysis including 50 plant species. New Phytologist  doi: 10.1111/nph.18037
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